SCOP 1.73: Domain d2idbb1: 2idb B:7-325

Lineage for d2idbb1 (2idb B:7-325)

1. Root: SCOP 1.73

2. Class b: All beta proteins [48724] (165 folds)

3. Fold b.45: Split barrel-like [50474] (2 superfamilies)
   barrel; n=6, S=10; greek-key

4. Superfamily b.45.1: FMN-binding split barrel [50475] (3 families)
   related to the ferredoxin reductase-like FAD-binding domain

5. Family b.45.1.3: UbiD middle domain-like [141368] (1 protein)
   N terminal part of Pfam PF01977; overall structural similarity to one subunit of the NADH:FMN oxidoreductase-like family (scop_fa 50482); not known to bind a flavin cofactor; also includes the N-terminal alpha+beta subdomain (~110 residues)

6. Protein 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD [141369] (1 species)

7. Species Escherichia coli [TaxId:562] [141370] (1 PDB entry)

8. Domain d2idbb1: 2idb B:7-325 [137272]
   Other proteins in same PDB: d2idba2, d2idbb2, d2idbc2
   automatically matched to 2IDB A:6-325
   complexed with 1pe, edo

Details for d2idbb1

PDB Entry: 2idb, 2.9 Å

PDB Description: crystal structure of 3-octaprenyl-4-hydroxybenzoate decarboxylase (ubid) from escherichia coli, northeast structural genomics target er459.

PDB Compounds: (B:) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

SCOP Domain Sequences for d2idbb1:

Sequence, based on SEQRES records:

>d2idbb1 b.45.1.3 (B:7-325) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD {Escherichia coli [TaxId: 562]}
ndlrdfltlleqqgelkritlpvdphleiteiadrtlraggpallfenpkgysmpvlcnl
fgtpkrvamgmgqedvsalrevgkllaflkepeppkgfrdlfdklpqfkqvlnmptkrlr
gapcqqkivsgddvdlnripimtcwpedaaplitwgltvtrgphkerqnlgiyrqqligk
nklimrwlshrggaldyqewcaahpgerfpvsvalgadpatilgavtpvpdtlseyafag
llrgtktevvkcisndlevpasaeivlegyieqgetapegpygdhtgyynevdsfpvftv
thitqredaiyhstytgrp

Sequence, based on observed residues (ATOM records):

>d2idbb1 b.45.1.3 (B:7-325) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiD {Escherichia coli [TaxId: 562]}
ndlrdfltlleqqgelkritlpvdphleiteiadrtlraggpallfenpkgysmpvlcnl
fgtpkrvamgmgqedvsalrevgkllamptkrlrgapcqqkivsgddvdlnripimtcwp
edaaplitwgltvtrgphkerqnlgiyrqqligknklimrwlshrggaldyqewcaahpg
erfpvsvalgadpatilgavtpveyafagllrgtktevvkcisndlevpasaeivlegyi
eqgetapegpygdhtgyynevdsfpvftvthitqredaiyhstytgrp

Timeline for d2idbb1:

• d2idbb1 is new in SCOP 1.73
  
• d2idbb1 appears in SCOP 1.75
  
• d2idbb1 appears in the current release, SCOPe 2.08