Lineage for d2i60q1 (2i60 Q:1-107)

  1. Root: SCOPe 2.07
  2. 2352458Class b: All beta proteins [48724] (178 folds)
  3. 2352459Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 2352460Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 2352461Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. 2353665Protein Immunoglobulin light chain kappa variable domain, VL-kappa [88519] (16 species)
    VL-kappa domains of human and mouse antibodies are clustered by the sequence similarity within the germline encoded segment and then by the size of the complementarity determining regions CDR1 and CDR2, so the clusters may correspond to putative germline families in the species genomes; VL-kappa domains with artificial or grafted exogenous CDRs are listed as engineered species
  7. 2353828Species Human (Homo sapiens), cluster 3.2 [TaxId:9606] [88523] (31 PDB entries)
  8. 2353866Domain d2i60q1: 2i60 Q:1-107 [137087]
    Other proteins in same PDB: d2i60g_, d2i60h1, d2i60h2, d2i60l2, d2i60m1, d2i60p2, d2i60p3, d2i60q2, d2i60r1, d2i60r2, d2i60s1
    automatically matched to d1g9ml1
    complexed with ipa, nag, ndg

Details for d2i60q1

PDB Entry: 2i60 (more details), 2.4 Å

PDB Description: crystal structure of [phe23]m47, a scorpion-toxin mimic of cd4, in complex with hiv-1 yu2 gp120 envelope glycoprotein and anti-hiv-1 antibody 17b
PDB Compounds: (Q:) Antibody 17B Light chain

SCOPe Domain Sequences for d2i60q1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2i60q1 b.1.1.1 (Q:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

SCOPe Domain Coordinates for d2i60q1:

Click to download the PDB-style file with coordinates for d2i60q1.
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Timeline for d2i60q1: