SCOP 1.73: Domain d2hvid2: 2hvi D:469-876

Lineage for d2hvid2 (2hvi D:469-876)

1. Root: SCOP 1.73

2. Class e: Multi-domain proteins (alpha and beta) [56572] (53 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (4 proteins)

6. Protein DNA polymerase I (Klenow fragment) [56674] (3 species)

7. Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [56677] (42 PDB entries)

8. Domain d2hvid2: 2hvi D:469-876 [136811]
   Other proteins in same PDB: d2hvia1, d2hvid1
   automatically matched to d1l3sa2
   complexed with dct, ddg, mg, so4, suc

Details for d2hvid2

PDB Entry: 2hvi, 1.98 Å

PDB Description: ddctp:g pair in the polymerase active site (0 position)

PDB Compounds: (D:) DNA polymerase I

SCOP Domain Sequences for d2hvid2:

Sequence; same for both SEQRES and ATOM records:

>d2hvid2 e.8.1.1 (D:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}
eqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefni
nspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyi
egllkvvrpatkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwl
ifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakav
nygivygisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllh
rrrylpditsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqv
hdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak

Timeline for d2hvid2:

• d2hvid2 is new in SCOP 1.73
  
• d2hvid2 appears in SCOP 1.75
  
• d2hvid2 appears in the current release, SCOPe 2.08