SCOPe 2.07: Domain d2hvid1: 2hvi D:297-468

Lineage for d2hvid1 (2hvi D:297-468)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (16 families)
   consists of one domain of this fold

5. Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 proteins)
   contains Pfam PF00929

6. Protein Exonuclease domain of prokaryotic DNA polymerase [53119] (3 species)
   part of Klenow fragment, KF

7. Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [53122] (43 PDB entries)
   Uniprot Q45458 298-876 # 88% sequence identity ! Uniprot Q5KWC1 299-878 # 99% sequence identity; Geobacillus kaustophilus TaxID:1462

8. Domain d2hvid1: 2hvi D:297-468 [136810]
   Other proteins in same PDB: d2hvia2, d2hvid2
   protein/DNA complex; complexed with dct, mg, so4, suc

Details for d2hvid1

PDB Entry: 2hvi, 1.98 Å

PDB Description: ddctp:g pair in the polymerase active site (0 position)

PDB Compounds: (D:) DNA polymerase I

SCOPe Domain Sequences for d2hvid1:

Sequence; same for both SEQRES and ATOM records:

>d2hvid1 c.55.3.5 (D:297-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}
kkmaftladrvteemladkaalvvevveenyhdapivgiavvnehgrfflrpetaladpq
fvawlgdetkkksmfdskraavalkwkgielcgvsfdlllaaylldpaqgvddvaaaakm
kqyeavrpdeavygkgakravpdepvlaehlvrkaaaiwelerpfldelrrn

Timeline for d2hvid1:

• d2hvid1 first appeared in SCOP 1.73
  
• d2hvid1 appears in SCOPe 2.06
  
• d2hvid1 appears in the current release, SCOPe 2.08