SCOP 1.75: Domain d2gykb1: 2gyk B:4-133

Lineage for d2gykb1 (2gyk B:4-133)

1. Root: SCOP 1.75

2. Class d: Alpha and beta proteins (a+b) [53931] (376 folds)

3. Fold d.4: His-Me finger endonucleases [54059] (1 superfamily)
   core: (alpha)-beta-omega_loop-beta-alpha; embeded in larger different structures

4. Superfamily d.4.1: His-Me finger endonucleases [54060] (6 families)
   common motif contains conserved histidine residue and metal-binding site

5. Family d.4.1.1: HNH-motif [54061] (2 proteins)

6. Protein DNase domain of colicin E9 [54064] (1 species)

7. Species Escherichia coli [TaxId:562] [54065] (13 PDB entries)
   Uniprot P09883 456-581

8. Domain d2gykb1: 2gyk B:4-133 [135857]
   Other proteins in same PDB: d2gyka1, d2gyke1
   automatically matched to d1fsjb_
   complexed with po4, zn; mutant

Details for d2gykb1

PDB Entry: 2gyk, 1.6 Å

PDB Description: crystal structure of the complex of the colicin e9 dnase domain with a mutant immunity protein, imme9 (d51a)

PDB Compounds: (B:) colicin-e9

SCOP Domain Sequences for d2gykb1:

Sequence; same for both SEQRES and ATOM records:

>d2gykb1 d.4.1.1 (B:4-133) DNase domain of colicin E9 {Escherichia coli [TaxId: 562]}
krnkpgkatgkgkpvgdkwlddagkdsgapipdriadklrdkefksfddfrkavweevsk
dpelsknlnpsnkssvskgyspftpknqqvggrkvyelhhdkpisqggevydmdnirvtt
pkrhidihrg

Timeline for d2gykb1:

• d2gykb1 first appeared in SCOP 1.73
  
• d2gykb1 is called d2gykb_ in SCOPe 2.01
  
• d2gykb1 appears in the current release, SCOPe 2.08, called d2gykb_