Lineage for d2gyc11 (2gyc 1:1-52)

  1. Root: SCOPe 2.01
  2. 1061255Class g: Small proteins [56992] (90 folds)
  3. 1065992Fold g.41: Rubredoxin-like [57769] (17 superfamilies)
    metal(zinc or iron)-bound fold; sequence contains two CX(n)C motifs, in most cases n = 2
  4. 1066475Superfamily g.41.8: Zn-binding ribosomal proteins [57829] (8 families) (S)
  5. 1066676Family g.41.8.6: Ribosomal protein L33p [144203] (1 protein)
    Pfam PF00471; corresponds structurally and functionally to the ribosomal L44e from eukaryota and archaea; metal ion-binding site is lost in most members
  6. 1066677Protein Ribosomal protein L33p [144204] (3 species)
  7. 1066685Species Escherichia coli [TaxId:562] [144205] (9 PDB entries)
    Uniprot P0A7N9 1-54
  8. 1066692Domain d2gyc11: 2gyc 1:1-52 [135845]
    Other proteins in same PDB: d2gyc31, d2gyc32, d2gyc51, d2gyc52, d2gycb1, d2gycc1, d2gycd1, d2gycf1, d2gycf2, d2gycg1, d2gycg2, d2gych1, d2gyci1, d2gycj1, d2gyck1, d2gycm1, d2gycn1, d2gyco1, d2gycq1, d2gycs1, d2gyct1, d2gycu1, d2gycw1, d2gycx1
    automatically matched to 2AW4 1:1-54
    protein/RNA complex

Details for d2gyc11

PDB Entry: 2gyc (more details), 15 Å

PDB Description: Structure of the 50S subunit of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
PDB Compounds: (1:) 50S ribosomal protein L33

SCOPe Domain Sequences for d2gyc11:

Sequence; same for both SEQRES and ATOM records: (download)

>d2gyc11 g.41.8.6 (1:1-52) Ribosomal protein L33p {Escherichia coli [TaxId: 562]}
akgirekiklvssagtghfytttknkrtkpeklelkkfdpvvrqhviykeak

SCOPe Domain Coordinates for d2gyc11:

Click to download the PDB-style file with coordinates for d2gyc11.
(The format of our PDB-style files is described here.)

Timeline for d2gyc11: