Lineage for d2gsyj1 (2gsy J:8-440)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 679605Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 679742Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (9 families) (S)
  5. 680175Family b.121.4.9: Birnaviridae-like VP [141109] (1 protein)
    dsRNA virus but unlike the other dsRNA viruses has a genomic arrangement and genomic replication strategy similar to +sRNA viruses; includes Pfam PF01766; Birnavirus VP2 protein
  6. 680176Protein Birnavirus VP2 [141110] (1 species)
    Link between +sRNA and dsRNA viruses two domains - the first similar to scop_sf 88633 and the second, insert domain is similar to scop_sf 49818. dsRNA virus but unlike the other dsRNA viruses has a genomic arrangement and genomic replication strategy similar to +sRNA viruses
  7. 680177Species Infectious bursal disease virus [TaxId:10995] [141111] (3 PDB entries)
  8. 680208Domain d2gsyj1: 2gsy J:8-440 [135608]
    automatically matched to 2GSY A:8-440
    complexed with ca

Details for d2gsyj1

PDB Entry: 2gsy (more details), 2.6 Å

PDB Description: The 2.6A structure of Infectious Bursal Virus Derived T=1 Particles
PDB Compounds: (J:) Polyprotein

SCOP Domain Sequences for d2gsyj1:

Sequence, based on SEQRES records: (download)

>d2gsyj1 b.121.4.9 (J:8-440) Birnavirus VP2 {Infectious bursal disease virus [TaxId: 10995]}
tqqivpfirsllmpttgpasipddtlekhtlrsetstynltvgdtgsglivffpgfpgsi
vgahytlqgngnykfdqmlltaqnlpasynycrlvsrsltvrsstlpggvyalngtinav
tfqgslseltdvsynglmsatanindkignvlvgegvtvlslptsydlgyvrlgdpipai
gldpkmvatcdssdrprvytitaaddyqfssqyqpggvtitlfsanidaitslsvggelv
frtsvhglvlgatiyligfdgttvitravaannglttgtdnlmpfnlviptneitqpits
ikleivtsksggqagdqmswsargslavtihggnypgalrpvtlvayervatgsvvtvag
vsnfelipnpelaknlvteygrfdpgamnytklilserdrlgiktvwptreytdfreyfm
evadlnsplkiag

Sequence, based on observed residues (ATOM records): (download)

>d2gsyj1 b.121.4.9 (J:8-440) Birnavirus VP2 {Infectious bursal disease virus [TaxId: 10995]}
tqqivpfirsllmpttgpasipddtlekhtlrsetstynltvgdtgsglivffpgfpgsi
vgahytlqgngnykfdqmlltaqnlpasynycrlvsrsltvrsstlplngtinavtfqgs
lseltdvsynglmsatanindkignvlvgegvtvlslptsydlgyvrlgdpipaigldpk
mvatcdssdrprvytitaaddyqfssqyqpggvtitlfsanidaitslsvggelvfrtsv
hglvlgatiyligfdgttvitravaannglttgtdnlmpfnlviptneitqpitsiklei
vtsksggqagdqmswsargslavtihggnypgalrpvtlvayervatgsvvtvagvsnfe
lipnpelaknlvteygrfdpgamnytklilserdrlgiktvwptreytdfreyfmevadl
nsplkiag

SCOP Domain Coordinates for d2gsyj1:

Click to download the PDB-style file with coordinates for d2gsyj1.
(The format of our PDB-style files is described here.)

Timeline for d2gsyj1: