SCOP 1.73: Domain d2gsyd1: 2gsy D:8-440

Lineage for d2gsyd1 (2gsy D:8-440)

1. Root: SCOP 1.73

2. Class b: All beta proteins [48724] (165 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (9 families)

5. Family b.121.4.9: Birnaviridae-like VP [141109] (1 protein)
   dsRNA virus but unlike the other dsRNA viruses has a genomic arrangement and genomic replication strategy similar to +sRNA viruses; includes Pfam PF01766; Birnavirus VP2 protein

6. Protein Birnavirus VP2 [141110] (1 species)
   Link between +sRNA and dsRNA viruses two domains - the first similar to scop_sf 88633 and the second, insert domain is similar to scop_sf 49818. dsRNA virus but unlike the other dsRNA viruses has a genomic arrangement and genomic replication strategy similar to +sRNA viruses

7. Species Infectious bursal disease virus [TaxId:10995] [141111] (3 PDB entries)

8. Domain d2gsyd1: 2gsy D:8-440 [135602]
   automatically matched to 2GSY A:8-440
   complexed with ca

Details for d2gsyd1

PDB Entry: 2gsy, 2.6 Å

PDB Description: The 2.6A structure of Infectious Bursal Virus Derived T=1 Particles

PDB Compounds: (D:) Polyprotein

SCOP Domain Sequences for d2gsyd1:

Sequence, based on SEQRES records:

>d2gsyd1 b.121.4.9 (D:8-440) Birnavirus VP2 {Infectious bursal disease virus [TaxId: 10995]}
tqqivpfirsllmpttgpasipddtlekhtlrsetstynltvgdtgsglivffpgfpgsi
vgahytlqgngnykfdqmlltaqnlpasynycrlvsrsltvrsstlpggvyalngtinav
tfqgslseltdvsynglmsatanindkignvlvgegvtvlslptsydlgyvrlgdpipai
gldpkmvatcdssdrprvytitaaddyqfssqyqpggvtitlfsanidaitslsvggelv
frtsvhglvlgatiyligfdgttvitravaannglttgtdnlmpfnlviptneitqpits
ikleivtsksggqagdqmswsargslavtihggnypgalrpvtlvayervatgsvvtvag
vsnfelipnpelaknlvteygrfdpgamnytklilserdrlgiktvwptreytdfreyfm
evadlnsplkiag

Sequence, based on observed residues (ATOM records):

>d2gsyd1 b.121.4.9 (D:8-440) Birnavirus VP2 {Infectious bursal disease virus [TaxId: 10995]}
tqqivpfirsllmpttgpasipddtlekhtlrsetstynltvgdtgsglivffpgfpgsi
vgahytlqgngnykfdqmlltaqnlpasynycrlvsrsltvrsstlplngtinavtfqgs
lseltdvsynglmsatanindkignvlvgegvtvlslptsydlgyvrlgdpipaigldpk
mvatcdssdrprvytitaaddyqfssqyqpggvtitlfsanidaitslsvggelvfrtsv
hglvlgatiyligfdgttvitravaannglttgtdnlmpfnlviptneitqpitsiklei
vtsksggqagdqmswsargslavtihggnypgalrpvtlvayervatgsvvtvagvsnfe
lipnpelaknlvteygrfdpgamnytklilserdrlgiktvwptreytdfreyfmevadl
nsplkiag

Timeline for d2gsyd1:

• d2gsyd1 is new in SCOP 1.73
  
• d2gsyd1 appears in SCOP 1.75
  
• d2gsyd1 appears in the current release, SCOPe 2.08, called d2gsyd_