Lineage for d2giya1 (2giy A:218-390)

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.1: Immunoglobulin-like beta-sandwich [48725] (33 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. Family b.1.1.1: V set domains (antibody variable domain-like) [48727] (33 proteins)
  6. Protein Alphaherpesvirus glycoprotein E [141008] (1 species)
    elaborated with insertions and C-terminal extensions
  7. Species Human herpesvirus 1 [TaxId:10298] [141009] (2 PDB entries)
    Uniprot P04488 218-394! Uniprot P04488 220-390
  8. Domain d2giya1: 2giy A:218-390 [135254]
    Other proteins in same PDB: d2giya2, d2giyb3
    has additional subdomain(s) that are not in the common domain

Details for d2giya1

PDB Entry: 2giy (more details), 1.7800000000000002 Å

PDB Description: crystal structure of the c-terminal domain of the hsv-1 ge ectodomain
PDB Compounds: (A:) Glycoprotein E

SCOPe Domain Sequences for d2giya1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2giya1 b.1.1.1 (A:218-390) Alphaherpesvirus glycoprotein E {Human herpesvirus 1 [TaxId: 10298]}
hvrgvtvrmetpeailfspgetfstnvsihaiahddqtysmdvvwlrfdvptscaemriy
esclyhpqlpeclspadapcaastwtsrlavrsyagcsrtnppprcsaeahmepvpglaw
qaasvnlefrdaspqhsglylcvvyvndhihawghitistaaqyrnavveqpl

SCOPe Domain Coordinates for d2giya1 are not available.

Timeline for d2giya1:

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Domains from same chain:
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d2giya2
View in 3D
Domains from other chains:
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d2giyb2, d2giyb3