SCOPe 2.05: Domain d2gged1: 2gge D:119-377

Lineage for d2gged1 (2gge D:119-377)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.11: Enolase C-terminal domain-like [51604] (3 families)
   binds metal ion (magnesium or manganese) in conserved site inside barrel
   N-terminal alpha+beta domain is common to this superfamily

5. Family c.1.11.2: D-glucarate dehydratase-like [51609] (15 proteins)

6. Protein Hypothetical protein YitF [141844] (1 species)

7. Species Bacillus subtilis [TaxId:1423] [141845] (2 PDB entries)
   Uniprot O06741 115-371

8. Domain d2gged1: 2gge D:119-377 [135134]
   Other proteins in same PDB: d2ggea2, d2ggeb2, d2ggec2, d2gged2, d2ggee2, d2ggef2, d2ggeg2, d2ggeh2
   automated match to d2gdqa1
   complexed with cl, mg

Details for d2gged1

PDB Entry: 2gge, 1.89 Å

PDB Description: crystal structure of mandelate racemase/muconate lactonizing enzyme from bacillus subtilis complexed with mg++ at 1.8 a

PDB Compounds: (D:) yitF

SCOPe Domain Sequences for d2gged1:

Sequence; same for both SEQRES and ATOM records:

>d2gged1 c.1.11.2 (D:119-377) Hypothetical protein YitF {Bacillus subtilis [TaxId: 1423]}
ryreeipvyasfqsysdspqwisrsvsnveaqlkkgfeqikvkiggtsfkedvrhinalq
htagssitmildanqsydaaaafkweryfsewtnigwleeplpfdqpqdyamlrsrlsvp
vaggenmkgpaqyvpllsqrcldiiqpdvmhvngidefrdclqlaryfgvrasahaydgs
lsrlyalfaqaclppwskmkndhiepiewdvmenpftdlvslqpskgmvhipkgkgigte
inmeivnrykwdgsayegh

Timeline for d2gged1:

• d2gged1 first appeared in SCOP 1.73
  
• d2gged1 appears in SCOPe 2.04
  
• d2gged1 appears in SCOPe 2.06
  
• d2gged1 appears in the current release, SCOPe 2.08