Lineage for d2gdja_ (2gdj A:)

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2109203Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
    3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes
  4. 2109204Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (26 families) (S)
    division into families based on beta-sheet topologies
  5. 2112131Family c.37.1.11: RecA protein-like (ATPase-domain) [52670] (21 protein domains)
    core: mixed beta-sheet of 8 strands, order 32451678; strand 7 is antiparallel to the rest
  6. 2112413Protein DNA repair protein Rad51, catalytic domain [82412] (7 species)
  7. 2112424Species Methanococcus voltae [TaxId:2188] [110555] (14 PDB entries)
    Uniprot O73948
  8. 2112448Domain d2gdja_: 2gdj A: [135018]
    automated match to d4dc9a_
    complexed with anp, mg

Details for d2gdja_

PDB Entry: 2gdj (more details), 2.5 Å

PDB Description: delta-62 rada recombinase in complex with amp-pnp and magnesium
PDB Compounds: (A:) DNA repair and recombination protein radA

SCOPe Domain Sequences for d2gdja_:

Sequence, based on SEQRES records: (download)

>d2gdja_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Methanococcus voltae [TaxId: 2188]}
gfksgidllkqrstvwklstssseldsvlggglesqsvtefagvfgsgktqimhqscvnl
qnpeflfydeeavskgevaqpkavyidtegtfrperimqmaehagidgqtvldntfvara
ynsdmqmlfaekiedliqegnniklvvidsltstfrneytgrgklaerqqklgrhmatln
kladlfncvvlvtnqvsakpdaffgmaeqaigghivghaatfrffvrkgkgdkrvaklyd
sphlpdaeaifritekgiqd

Sequence, based on observed residues (ATOM records): (download)

>d2gdja_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Methanococcus voltae [TaxId: 2188]}
gfksgidllkqrstvwklstssseldsvlggglesqsvtefagvfgsgktqimhqscvnl
qnpeflfydeeavskgevaqpkavyidtegtfrperimqmaehagidgqtvldntfvara
ynsdmqmlfaekiedliqegnniklvvidsltstfrneygklaerqqklgrhmatlnkla
dlfncvvlvtnqvghaatfrffvrkgkgdkrvaklydsphlpdaeaifritekgiqd

SCOPe Domain Coordinates for d2gdja_:

Click to download the PDB-style file with coordinates for d2gdja_.
(The format of our PDB-style files is described here.)

Timeline for d2gdja_: