Lineage for d2gaza2 (2gaz A:7-185)

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2163004Fold d.19: MHC antigen-recognition domain [54451] (1 superfamily)
    dimeric
  4. 2163005Superfamily d.19.1: MHC antigen-recognition domain [54452] (2 families) (S)
  5. 2163006Family d.19.1.1: MHC antigen-recognition domain [54453] (13 protein domains)
  6. 2163007Protein CD1, alpha-1 and alpha-2 domains [54456] (5 species)
    Class I MHC-related
  7. 2163048Species Mouse (Mus musculus) [TaxId:10090] [54457] (25 PDB entries)
  8. 2163062Domain d2gaza2: 2gaz A:7-185 [134897]
    Other proteins in same PDB: d2gaza1, d2gazb_
    automated match to d1onqa2
    complexed with nag, xpx

Details for d2gaza2

PDB Entry: 2gaz (more details), 2.61 Å

PDB Description: Mycobacterial lipoglycan presentation by CD1d
PDB Compounds: (A:) T-cell surface glycoprotein CD1d1

SCOPe Domain Sequences for d2gaza2:

Sequence, based on SEQRES records: (download)

>d2gaza2 d.19.1.1 (A:7-185) CD1, alpha-1 and alpha-2 domains {Mouse (Mus musculus) [TaxId: 10090]}
nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmspkedypieiqlsagcemypgnasesflhvafqgkyvv
rfwgtswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlek

Sequence, based on observed residues (ATOM records): (download)

>d2gaza2 d.19.1.1 (A:7-185) CD1, alpha-1 and alpha-2 domains {Mouse (Mus musculus) [TaxId: 10090]}
nytfrclqmssfanrswsrtdsvvwlgdlqthrwsndsatisftkpwsqgklsnqqwekl
qhmfqvyrvsftrdiqelvkmmdypieiqlsagcemypgnasesflhvafqgkyvvrfwg
tswqtvpgapswldlpikvlnadqgtsatvqmllndtcplfvrglleagksdlek

SCOPe Domain Coordinates for d2gaza2:

Click to download the PDB-style file with coordinates for d2gaza2.
(The format of our PDB-style files is described here.)

Timeline for d2gaza2:

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Domains from same chain:
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d2gaza1
View in 3D
Domains from other chains:
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d2gazb_