Lineage for d2frda1 (2frd A:144-326)

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1576363Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 1576364Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 1578881Family c.2.1.4: Formate/glycerate dehydrogenases, NAD-domain [51830] (10 proteins)
    this domain interrupts the other domain which defines family
  6. 1578910Protein Nicotinamide nucleotide transhydrogenase dI component [63937] (1 species)
    L-alanine dehydrogenase homologue
  7. 1578911Species Rhodospirillum rubrum [TaxId:1085] [63938] (15 PDB entries)
  8. 1578950Domain d2frda1: 2frd A:144-326 [133980]
    Other proteins in same PDB: d2frda2, d2frdb2, d2frdc1
    automatically matched to d1f8ga1
    complexed with nai, ndp

Details for d2frda1

PDB Entry: 2frd (more details), 3.2 Å

PDB Description: structure of transhydrogenase (di.s138a.nadh)2(diii.nadph)1 asymmetric complex
PDB Compounds: (A:) NAD(P) transhydrogenase subunit alpha part 1

SCOPe Domain Sequences for d2frda1:

Sequence, based on SEQRES records: (download)

>d2frda1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}
agyravidgayefarafpmmmtaagtvpparvlvfgvgvaglqaiatakrlgavvmatdv
raatkeqveslggkfitvddeamktaetaggyakemgeefrkkqaeavlkelvktdiait
talipgkpapvliteemvtkmkpgsviidlaveaggncplsepgkivvkhgvkivghtnv
psr

Sequence, based on observed residues (ATOM records): (download)

>d2frda1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}
agyravidgayefarafpmmmtaagtvpparvlvfgvgvaglqaiatakrlgavvmatdv
raatkeqveslggkfitvaggyakemgeefrkkqaeavlkelvktdiaittalipgkpap
vliteemvtkmkpgsviidlaveaggncplsepgkivvkhgvkivghtnvpsr

SCOPe Domain Coordinates for d2frda1:

Click to download the PDB-style file with coordinates for d2frda1.
(The format of our PDB-style files is described here.)

Timeline for d2frda1: