Lineage for d2fifd1 (2fif D:16-73)

  1. Root: SCOP 1.75
  2. 888632Class g: Small proteins [56992] (90 folds)
  3. 892407Fold g.39: Glucocorticoid receptor-like (DNA-binding domain) [57715] (1 superfamily)
    alpha+beta metal(zinc)-bound fold
  4. 892408Superfamily g.39.1: Glucocorticoid receptor-like (DNA-binding domain) [57716] (18 families) (S)
  5. 892877Family g.39.1.15: A20-like zinc finger [144187] (1 protein)
    Pfam PF01754
  6. 892878Protein RabGEF1 (Rabex-5), ubiquitin-binding domain [144188] (2 species)
    binds to ubiquitin with the extended C-terminal helix
  7. 892879Species Cow (Bos taurus) [TaxId:9913] [144189] (2 PDB entries)
    Uniprot O18973 14-73
  8. 892881Domain d2fifd1: 2fif D:16-73 [133521]
    Other proteins in same PDB: d2fifa1, d2fifc1, d2fife1
    automatically matched to 2FID B:14-73
    complexed with so4, zn

Details for d2fifd1

PDB Entry: 2fif (more details), 2.49 Å

PDB Description: Crystal Structure of a Bovine Rabex-5 fragment complexed with ubiquitin
PDB Compounds: (D:) Rab5 GDP/GTP exchange factor

SCOP Domain Sequences for d2fifd1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2fifd1 g.39.1.15 (D:16-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Cow (Bos taurus) [TaxId: 9913]}

SCOP Domain Coordinates for d2fifd1:

Click to download the PDB-style file with coordinates for d2fifd1.
(The format of our PDB-style files is described here.)

Timeline for d2fifd1: