SCOPe 2.04: Domain d2fidb1: 2fid B:14-73

Lineage for d2fidb1 (2fid B:14-73)

1. Root: SCOPe 2.04

2. Class g: Small proteins [56992] (91 folds)

3. Fold g.39: Glucocorticoid receptor-like (DNA-binding domain) [57715] (1 superfamily)
   alpha+beta metal(zinc)-bound fold

4. Superfamily g.39.1: Glucocorticoid receptor-like (DNA-binding domain) [57716] (19 families)

5. Family g.39.1.15: A20-like zinc finger [144187] (1 protein)
   Pfam PF01754

6. Protein RabGEF1 (Rabex-5), ubiquitin-binding domain [144188] (2 species)
   binds to ubiquitin with the extended C-terminal helix

7. Species Cow (Bos taurus) [TaxId:9913] [144189] (2 PDB entries)
   Uniprot O18973 14-73

8. Domain d2fidb1: 2fid B:14-73 [133517]
   Other proteins in same PDB: d2fida_
   complexed with zn

Details for d2fidb1

PDB Entry: 2fid, 2.8 Å

PDB Description: Crystal Structure of a Bovine Rabex-5 fragment complexed with ubiquitin

PDB Compounds: (B:) Rab5 GDP/GTP exchange factor

SCOPe Domain Sequences for d2fidb1:

Sequence; same for both SEQRES and ATOM records:

>d2fidb1 g.39.1.15 (B:14-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Cow (Bos taurus) [TaxId: 9913]}
qsellckkgcgyygnpawqgfcskcwreeyhkarqkqiqedwelaerlqreeeeafassq

Timeline for d2fidb1:

• d2fidb1 first appeared in SCOP 1.73
  
• d2fidb1 appears in SCOPe 2.03
  
• d2fidb1 appears in SCOPe 2.05
  
• d2fidb1 appears in the current release, SCOPe 2.08