Lineage for d2fdka1 (2fdk A:16-214)

  1. Root: SCOP 1.75
  2. 781541Class b: All beta proteins [48724] (174 folds)
  3. 809734Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
    one turn of helix is made by two pairs of antiparallel strands linked with short turns
    has appearance of a sandwich of distinct architecture and jelly-roll topology
  4. 810188Superfamily b.82.2: Clavaminate synthase-like [51197] (13 families) (S)
    Iron and ketoglutarate-dependent enzymes; elaborated version of this common fold
  5. 810358Family b.82.2.10: AlkB-like [141628] (2 proteins)
  6. 810362Protein Alkylated DNA repair protein AlkB [141629] (1 species)
  7. 810363Species Escherichia coli [TaxId:562] [141630] (7 PDB entries)
    Uniprot P05050 15-214
  8. 810367Domain d2fdka1: 2fdk A:16-214 [133313]
    automatically matched to 2FD8 A:15-214
    complexed with akg, fe2, ma7, sin

Details for d2fdka1

PDB Entry: 2fdk (more details), 2.3 Å

PDB Description: crystal structure of alkb in complex with fe(ii), 2-oxoglutarate, and methylated trinucleotide t-mea-t (air 9 days)
PDB Compounds: (A:) Alkylated DNA repair protein alkB

SCOP Domain Sequences for d2fdka1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2fdka1 b.82.2.10 (A:16-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]}

SCOP Domain Coordinates for d2fdka1:

Click to download the PDB-style file with coordinates for d2fdka1.
(The format of our PDB-style files is described here.)

Timeline for d2fdka1: