SCOPe 2.08: Domain d2fdca1: 2fdc A:2-414

Lineage for d2fdca1 (2fdc A:2-414)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.37: P-loop containing nucleoside triphosphate hydrolases [52539] (1 superfamily)
   3 layers: a/b/a, parallel or mixed beta-sheets of variable sizes

4. Superfamily c.37.1: P-loop containing nucleoside triphosphate hydrolases [52540] (27 families)
   division into families based on beta-sheet topologies

5. Family c.37.1.19: Tandem AAA-ATPase domain [81268] (41 proteins)
   duplication: tandem repeat of two RecA-like (AAA) domains

6. Protein Nucleotide excision repair enzyme UvrB, N-terminal domain [418968] (2 species)
   contains large insertions in the AAA domain

7. Species Bacillus caldotenax [TaxId:1395] [419430] (4 PDB entries)
   Uniprot P56981

8. Domain d2fdca1: 2fdc A:2-414 [133302]
   Other proteins in same PDB: d2fdca2, d2fdcb2
   automatically matched to d1d9xa1
   protein/DNA complex; complexed with flq
   has additional subdomain(s) that are not in the common domain

Details for d2fdca1

PDB Entry: 2fdc, 3.3 Å

PDB Description: structural basis of dna damage recognition and processing by uvrb: crystal structure of a uvrb/dna complex

PDB Compounds: (A:) UvrABC system protein B

SCOPe Domain Sequences for d2fdca1:

Sequence, based on SEQRES records:

>d2fdca1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB, N-terminal domain {Bacillus caldotenax [TaxId: 1395]}
egrfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkptl
viahnktlagqlyselkeffphnaveyfvsyydyyqpeayvpqtdtyiekdakindeidk
lrhsatsalferrdviivasvsciyglgspeeyrelvvslrvgmeiernallrrlvdiqy
drndidfrrgtfrvrgdvveifpasrdehcirveffgdeierirevdaltgevlgerehv
aifpashfvtreekmrlaiqnieqeleerlaelraqgklleaqrleqrtrydlemmremg
fcsgienysrhlalrppgstpytlldyfpddfliivdeshvtlpqlrgmyngdrarkqvl
vdhgfrlpsaldnrpltfeefeqkinqiiyvsatpgpyelehspgvveqiirp

Sequence, based on observed residues (ATOM records):

>d2fdca1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB, N-terminal domain {Bacillus caldotenax [TaxId: 1395]}
egrfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkptl
viahnktlagqlyselkeffphnaveyfvsyydyyqpeayvpqtdtyiekdakindeidk
lrhsatsalferrdviivasvsciyglgspeeyrelvvifpashfvtreekmrlaiqnie
qeleerlaelraqgklleaqrleqrtrydlemmremgfcsgienysrhlalrppgstpyt
lldyfpddfliivdeshvtlpqlrgmyngdrarkqvlvdhgfrlpsaldnrpltfeefeq
kinqiiyvsatpgpyelehspgvveqiirp

Timeline for d2fdca1:

• d2fdca1 first appeared in SCOP 1.73
  
• d2fdca1 appears in SCOPe 2.07