SCOPe 2.05: Domain d2eked_: 2eke D:

Lineage for d2eked_ (2eke D:)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.15: beta-Grasp (ubiquitin-like) [54235] (14 superfamilies)
   core: beta(2)-alpha-beta(2); mixed beta-sheet 2143

4. Superfamily d.15.1: Ubiquitin-like [54236] (9 families)

5. Family d.15.1.1: Ubiquitin-related [54237] (39 proteins)
   Pfam PF00240

6. Protein SUMO-1 (smt3 homologue) [54241] (3 species)

7. Species Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId:4932] [54243] (3 PDB entries)

8. Domain d2eked_: 2eke D: [132284]
   Other proteins in same PDB: d2ekea_, d2ekeb_
   automated match to d1a5ra_

Details for d2eked_

PDB Entry: 2eke, 1.9 Å

PDB Description: Structure of a SUMO-binding-motif mimic bound to Smt3p-Ubc9p: conservation of a noncovalent Ubiquitin-like protein-E2 complex as a platform for selective interactions within a SUMO pathway

PDB Compounds: (D:) Ubiquitin-like protein SMT3

SCOPe Domain Sequences for d2eked_:

Sequence, based on SEQRES records:

>d2eked_ d.15.1.1 (D:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
dplvprgsevkpevkpethinlkvsdgsseiffkikkttplrrlmeafakrqgkemdslr
flydgiriqadqtpedldmedndiieahre

Sequence, based on observed residues (ATOM records):

>d2eked_ d.15.1.1 (D:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
dplvprgsevkpkpethinlkvsdgsseiffkikkttplrrlmeafakrqgkemdslrfl
ydgiriqadqtpedldmedndiieahre

Timeline for d2eked_:

• d2eked_ first appeared in SCOP 1.73, called d2eked1
  
• d2eked_ appears in SCOPe 2.04
  
• d2eked_ is called d2eked2 in SCOPe 2.06
  
• d2eked_ appears in the current release, SCOPe 2.08, called d2eked2