SCOPe 2.08: Domain d2e2jb1: 2e2j B:20-1222

Lineage for d2e2jb1 (2e2j B:20-1222)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.29: beta and beta-prime subunits of DNA dependent RNA-polymerase [64483] (1 superfamily)
   Multidomain subunits of complex domain organization

4. Superfamily e.29.1: beta and beta-prime subunits of DNA dependent RNA-polymerase [64484] (3 families)
   The catalytic site is formed by the association of two double-psi beta-barrel domains, one from each subunit

5. Family e.29.1.1: RNA-polymerase beta [64485] (4 proteins)

6. Protein RBP2 [64491] (2 species)

7. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [64492] (27 PDB entries)
   Uniprot P08518; part of multichain biological unit

8. Domain d2e2jb1: 2e2j B:20-1222 [132008]
   Other proteins in same PDB: d2e2ja1, d2e2jc1, d2e2jc2, d2e2je1, d2e2je2, d2e2jf1, d2e2jh1, d2e2ji1, d2e2ji2, d2e2jj1, d2e2jk1, d2e2jl1
   automatically matched to d1i50b_
   protein/DNA complex; protein/RNA complex; complexed with g2p, mg, zn

Details for d2e2jb1

PDB Entry: 2e2j, 3.5 Å

PDB Description: rna polymerase ii elongation complex in 5 mm mg+2 with gmpcpp

PDB Compounds: (B:) DNA-directed RNA polymerase II 140 kDa polypeptide

SCOPe Domain Sequences for d2e2jb1:

Sequence, based on SEQRES records:

>d2e2jb1 e.29.1.1 (B:20-1222) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
desapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstlileqlaqhtt
esdnisrkyeisfgkiyvtkpmvnesdgvthalypqearlrnltyssglfvdvkkrtyea
idvpgrelkyeliaeeseddsesgkvfigrlpimlrskncylseatesdlyklkecpfdm
ggyfiingsekvliaqersagnivqvfkkaapspishvaeirsalekgsrfistlqvkly
gregssartikatlpyikqdipiviifralgiipdgeilehicydvndwqmlemlkpcve
dgfviqdretaldfigrrgtalgikkekriqyakdilqkeflphitqlegfesrkafflg
yminrlllcaldrkdqddrdhfgkkrldlagpllaqlfktlfkkltkdifrymqrtveea
hdfnmklainaktitsglkyalatgnwgeqkkamssragvsqvlnrytysstlshlrrtn
tpigrdgklakprqlhnthwglvcpaetpegqacglvknlslmscisvgtdpmpiitfls
ewgmepledyvphqspdatrvfvngvwhgvhrnparlmetlrtlrrkgdinpevsmirdi
rekelkiftdagrvyrplfiveddeslghkelkvrkghiaklmateyqdieggfedveey
twssllneglveyidaeeeesiliamqpedlepaeaneendldvdpakrirvshhattft
hceihpsmilgvaasiipfpdhnqsprntyqsamgkqamgvfltnynvrmdtmanilyyp
qkplgttrameylkfrelpagqnaivaiacysgynqedsmimnqssidrglfrslffrsy
mdqekkygmsitetfekpqrtntlrmkhgtydkldddgliapgvrvsgedviigkttpis
pdeeelgqrtayhskrdastplrstengivdqvlvttnqdglkfvkvrvrttkipqigdk
fasrhgqkgtigityrredmpftaegivpdliinphaipsrmtvahliecllskvaalsg
negdaspftditvegiskllrehgyqsrgfevmynghtgkklmaqiffgptyyqrlrhmv
ddkiharargpmqvltrqpvegrsrdgglrfgemerdcmiahgaasflkerlmeasdafr
vhicgicglmtviaklnhnqfeckgcdnkidiyqihipyaakllfqelmamnitprlytd
rsr

Sequence, based on observed residues (ATOM records):

>d2e2jb1 e.29.1.1 (B:20-1222) RBP2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
desapitaedswavisaffrekglvsqqldsfnqfvdytlqdiicedstlieisfgkiyv
tkpmvnesdgvthalypqearlrnltyssglfvdvkkkvfigrlpimlrskncylseate
sdlyklkecpfdmggyfiingsekvliaqersagnivqvfkkaapspishvaeirsalek
gsrfistlqvklygregssartikatlpyikqdipiviifralgiipdgeilehicydvn
dwqmlemlkpcvedgfviqdretaldfigkekriqyakdilqkeflphitqlegfesrka
fflgyminrlllcaldrkdqddrdhfgkkrldlagpllaqlfktlfkkltkdifrymqrt
velainaktitsglkyalatgnwgeqkkamssragvsqvlnrytysstlshlrrtntpia
kprqlhnthwglvcpaetpegqacglvknlslmscisvgtdpmpiitflsewgmepledy
vphqspdatrvfvngvwhgvhrnparlmetlrtlrrkgdinpevsmirdirekelkiftd
agrvyrplfiveddeslghkelkvrkghiaklmateyqdeytwssllneglveyidaeee
esiliamqpedlepaeadvdpakrirvshhattfthceihpsmilgvaasiipfpdhnqs
prntyqsamgkqamgvfltnynvrmdtmanilyypqkplgttrameylkfrelpagqnai
vaiacysgynqedsmimnqssidrglfrslffrsymdqekkygmsitetfekpqrtntlr
mkhgtydkldddgliapgvrvsgedviigkttpisskrdastplrstengivdqvlvttn
qdglkfvkvrvrttkipqigdkfasrhgqkgtigityrredmpftaegivpdliinphai
psrmtvahliecllskvaalsgnegdaspftditvegiskllrehgyqsrgfevmynght
gkklmaqiffgptyyqrlrhmvddkiharargpmqvltrqpvegrsrdgglrfgemerdc
miahgaasflkerlmeasdafrvhicgicglmtviaklnhnqfeckgcdnkidiyqihip
yaakllfqelmamnitprlytdrsr

Timeline for d2e2jb1:

• d2e2jb1 first appeared in SCOP 1.73
  
• d2e2jb1 appears in SCOPe 2.07