Lineage for d2dy8a1 (2dy8 A:279-347)

  1. Root: SCOP 1.73
  2. 651986Class b: All beta proteins [48724] (165 folds)
  3. 665027Fold b.34: SH3-like barrel [50036] (18 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 665974Superfamily b.34.13: Chromo domain-like [54160] (3 families) (S)
    SH3-like barrel is capped by a C-terminal helix
  5. 665998Family b.34.13.2: Chromo domain [54165] (7 proteins)
    lacks the SH3-like barrel first strand that can be complemented by bound peptide ligand; in shadow chromo domain the corresponding site is altered by insertion; similarity to the IL8-like fold
  6. 665999Protein ATP-dependent helicase CHD1 (Chromo domain protein 1) [141220] (2 species)
  7. 666000Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [141222] (2 PDB entries)
  8. 666001Domain d2dy8a1: 2dy8 A:279-347 [131892]
    2nd chromodomain

Details for d2dy8a1

PDB Entry: 2dy8 (more details)

PDB Description: solution structure of the second chromodomain of yeast chd1
PDB Compounds: (A:) Chromo domain protein 1

SCOP Domain Sequences for d2dy8a1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2dy8a1 b.34.13.2 (A:279-347) ATP-dependent helicase CHD1 (Chromo domain protein 1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

SCOP Domain Coordinates for d2dy8a1:

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Timeline for d2dy8a1: