SCOP 1.73: Domain d2dy4d2: 2dy4 D:376-897

Lineage for d2dy4d2 (2dy4 D:376-897)

1. Root: SCOP 1.73

2. Class e: Multi-domain proteins (alpha and beta) [56572] (53 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (4 proteins)

6. Protein Family B DNA polymerase [56680] (7 species)

7. Species Bacteriophage RB69 [TaxId:12353] [56681] (10 PDB entries)

8. Domain d2dy4d2: 2dy4 D:376-897 [131889]
   Other proteins in same PDB: d2dy4a1, d2dy4b1, d2dy4c1, d2dy4d1
   automatically matched to d1clqa2
   complexed with ctg; mutant

Details for d2dy4d2

PDB Entry: 2dy4, 2.65 Å

PDB Description: crystal structure of rb69 gp43 in complex with dna containing thymine glycol

PDB Compounds: (D:) DNA polymerase

SCOP Domain Sequences for d2dy4d2:

Sequence; same for both SEQRES and ATOM records:

>d2dy4d2 e.8.1.1 (D:376-897) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]}
qnkvipqgrshpvqpypgafvkepipnrykyvmsfdltslypsiirqvnispetiagtfk
vaplhdyinavaerpsdvyscspngmmyykdrdgvvpteitkvfnqrkehkgymlaaqrn
geiikealhnpnlsvdepldvdyrfdfsdeikekikklsakslnemlfraqrtevagmta
qinrkllinslygalgnvwfryydlrnataittfgqmalqwierkvneylnevcgtegea
fvlygdtdsiyvsadkiidkvgeskfrdtnhwvdfldkfarermepaidrgfremceymn
nkqhlmfmdreaiagpplgskgiggfwtgkkryalnvwdmegtryaepklkimgletqks
stpkavqkalkecirrmlqegeeslqeyfkefekefrqlnyisiasvssanniakydvgg
fpgpkcpfhirgiltynraikgnidapqvvegekvyvlplregnpfgdkciawpsgteit
dlikddvlhwmdytvllektfikplegftsaakldyekkasl

Timeline for d2dy4d2:

• d2dy4d2 is new in SCOP 1.73
  
• d2dy4d2 appears in SCOP 1.75
  
• d2dy4d2 appears in the current release, SCOPe 2.08