Lineage for d2dw5a3 (2dw5 A:294-663)

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2213803Fold d.126: Pentein, beta/alpha-propeller [55908] (1 superfamily)
    duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis
  4. 2213804Superfamily d.126.1: Pentein [55909] (8 families) (S)
  5. 2213869Family d.126.1.5: Peptidylarginine deiminase Pad4, catalytic C-terminal domain [111152] (1 protein)
    # functionally related to the amidinotransferase, similar active sites
    automatically mapped to Pfam PF03068
  6. 2213870Protein Peptidylarginine deiminase Pad4, catalytic C-terminal domain [111153] (1 species)
  7. 2213871Species Human (Homo sapiens) [TaxId:9606] [111154] (17 PDB entries)
    Uniprot Q9UM07
  8. 2213876Domain d2dw5a3: 2dw5 A:294-663 [131807]
    Other proteins in same PDB: d2dw5a1, d2dw5a2
    automated match to d2dw5a3
    complexed with bfb, ca, so4

Details for d2dw5a3

PDB Entry: 2dw5 (more details), 2.3 Å

PDB Description: Crystal structure of human peptidylarginine deiminase 4 in complex with N-alpha-benzoyl-N5-(2-fluoro-1-iminoethyl)-L-ornithine amide
PDB Compounds: (A:) Protein-arginine deiminase type-4

SCOPe Domain Sequences for d2dw5a3:

Sequence, based on SEQRES records: (download)

>d2dw5a3 d.126.1.5 (A:294-663) Peptidylarginine deiminase Pad4, catalytic C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
apwimtpntqppqevyacsifenedflksvttlamkakcklticpeeenmddqwmqdeme
igyiqaphktlpvvfdsprnrglkefpikrvmgpdfgyvtrgpqtggisgldsfgnlevs
ppvtvrgkeyplgrilfgdscypsndsrqmhqalqdflsaqqvqapvklysdwlsvghvd
eflsfvpapdrkgfrlllasprscyklfqeqqneghgeallfegikkkkqqkiknilsnk
tlrehnsfvercidwnrellkrelglaesdiidipqlfklkefskaeaffpnmvnmlvlg
khlgipkpfgpvingrccleekvcslleplglqctfindfftyhirhgevhcgtnvrrkp
fsfkwwnmvp

Sequence, based on observed residues (ATOM records): (download)

>d2dw5a3 d.126.1.5 (A:294-663) Peptidylarginine deiminase Pad4, catalytic C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
apwimtpntqppqevyacsenedflksvttlamkakcklticpeeenmddqwmqdemeig
yiqaphktlpvvfdsprnrglkefpikrvmgpdfgyvtrgpqtggisgldsfgnlevspp
vtvrgkeyplgrilfgdscypsndsrqmhqalqdflsaqqvqapvklysdwlsvghvdef
lsfvpapdrkgfrlllasprscyklfqeqqneghgeallfegikkkkqqkiknilsnktl
rehnsfvercidwnrellkrelglaesdiidipqlfklkefskaeaffpnmvnmlvlgkh
lgipkpfgpvingrccleekvcslleplglqctfindfftyhirhgevhcgtnvrrkpfs
fkwwnmvp

SCOPe Domain Coordinates for d2dw5a3:

Click to download the PDB-style file with coordinates for d2dw5a3.
(The format of our PDB-style files is described here.)

Timeline for d2dw5a3: