Lineage for d2dpdb_ (2dpd B:)

  1. Root: SCOPe 2.08
  2. Class a: All alpha proteins [46456] (290 folds)
  3. Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. Superfamily a.4.5: 'Winged helix' DNA-binding domain [46785] (86 families) (S)
    contains a small beta-sheet (wing)
  5. Family a.4.5.7: Replication terminator protein (RTP) [46807] (1 protein)
    automatically mapped to Pfam PF02334
  6. Protein Replication terminator protein (RTP) [46808] (1 species)
    contains long helix in the C-terminal extension; forms dimer similar to the LysR-like dimer
  7. Species Bacillus subtilis [TaxId:1423] [46809] (7 PDB entries)
  8. Domain d2dpdb_: 2dpd B: [131611]
    automated match to d1bm9a_
    protein/DNA complex

Details for d2dpdb_

PDB Entry: 2dpd (more details), 3.17 Å

PDB Description: Crystal structure of the Replication Termination Protein in complex with a pseudosymmetric B-site
PDB Compounds: (B:) Replication termination protein

SCOPe Domain Sequences for d2dpdb_:

Sequence; same for both SEQRES and ATOM records: (download)

>d2dpdb_ a.4.5.7 (B:) Replication terminator protein (RTP) {Bacillus subtilis [TaxId: 1423]}
rsstgflvkqraflklymitmteqerlyglkllevlrsefkeigfkpnhtevyrslhell
ddgilkqikvkkegaklqevvlyqfkdyeaaklykkqlkveldrskkliekalsdnf

SCOPe Domain Coordinates for d2dpdb_ are not available.

Timeline for d2dpdb_:

Domains from other chains:
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d2dpda_