SCOPe 2.08: Domain d2dp8a_: 2dp8 A:

Lineage for d2dp8a_ (2dp8 A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.0: automated matches [191309] (1 protein)
   not a true family

6. Protein automated matches [190039] (161 species)
   not a true protein

7. Species Cow (Bos taurus) [TaxId:9913] [225036] (50 PDB entries)

8. Domain d2dp8a_: 2dp8 A: [131608]
   automated match to d1iq7a_
   complexed with co3, fe, so4, zn

Details for d2dp8a_

PDB Entry: 2dp8, 2.5 Å

PDB Description: carbohydrate recognition by lactoferrin: crystal structure of the complex of c-terminal lobe of bovine lactoferrin with trisaccharide at 2.5 a resolution

PDB Compounds: (A:) lactotransferrin

SCOPe Domain Sequences for d2dp8a_:

Sequence, based on SEQRES records:

>d2dp8a_ c.94.1.0 (A:) automated matches {Cow (Bos taurus) [TaxId: 9913]}
ytrvvwcavgpeeqkkcqqwsqqsgqnvtcatasttddcivlvlkgeadalnldggyiyt
agkcglvpvlaenrksskhssldcvlrptegylavavvkkanegltwnslkdkkschtav
drtagwnipmglivnqtgscafdeffsqscapgadpksrlcalcagddqgldkcvpnske
kyygytgafrclaedvgdvafvkndtvwentngestadwaknlkredfrllcldgtrkpv
teaqschlavapnhavvsrsdraahveqvllhqqalfgkngkncpdkfclfksetknllf
ndnteclaklggrptyeeylgteyvtaianlkkcstsplleacaf

Sequence, based on observed residues (ATOM records):

>d2dp8a_ c.94.1.0 (A:) automated matches {Cow (Bos taurus) [TaxId: 9913]}
ytrvvwcavgpeeqkkcqqwsqqsgqnvtcatasttddcivlvlkgeadalnldggyiyt
agkcglvpvlaenrksskhssldcvlrptegylavavvkkanegltwnslkdkkschtav
drtagwnipmglivnqtgscafdeffsqscapgadpksrlcalcagddqgldkcvpnske
kyygytgafrclaedvgdvafvkndtvwentngestadwaknlkredfrllcldgtrkpv
teaqschlavapnhavvsrsdraahveqvllhqqalfgkngkncpdkfclfksetknllf
ndnteclaklggrptyeeylgteyvtaianlkkcsleacaf

Timeline for d2dp8a_:

• d2dp8a_ first appeared in SCOP 1.73, called d2dp8a1
  
• d2dp8a_ appears in SCOPe 2.07