SCOPe 2.02: Domain d2dgmb_: 2dgm B:

Lineage for d2dgmb_ (2dgm B:)

1. Root: SCOPe 2.02

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.67: PLP-dependent transferase-like [53382] (3 superfamilies)
   main domain: 3 layers: a/b/a, mixed beta-sheet of 7 strands, order 3245671; strand 7 is antiparallel to the rest

4. Superfamily c.67.1: PLP-dependent transferases [53383] (10 families)

5. Family c.67.1.6: Pyridoxal-dependent decarboxylase [69565] (4 proteins)

6. Protein Glutamate decarboxylase beta, GadB [102596] (2 species)

7. Species Escherichia coli [TaxId:562] [102597] (5 PDB entries)

8. Domain d2dgmb_: 2dgm B: [131509]
   automated match to d1pmob_
   complexed with acy, fmt, iod, peg, plp

Details for d2dgmb_

PDB Entry: 2dgm, 1.95 Å

PDB Description: Crystal structure of Escherichia coli GadB in complex with iodide

PDB Compounds: (B:) Glutamate decarboxylase beta

SCOPe Domain Sequences for d2dgmb_:

Sequence; same for both SEQRES and ATOM records:

>d2dgmb_ c.67.1.6 (B:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}
kkqvtdlrselldsrfgaksistiaeskrfplhemrddvafqiindelyldgnarqnlat
fcqtwddenvhklmdlsinknwidkeeypqsaaidlrcvnmvadlwhapapkngqavgtn
tigsseacmlggmamkwrwrkrmeaagkptdkpnlvcgpvqicwhkfarywdvelreipm
rpgqlfmdpkrmieacdentigvvptfgvtytgnyefpqplhdaldkfqadtgididmhi
daasggflapfvapdivwdfrlprvksisasghkfglaplgcgwviwrdeealpqelvfn
vdylggqigtfainfsrpagqviaqyyeflrlgregytkvqnasyqvaayladeiaklgp
yefictgrpdegipavcfklkdgedpgytlydlserlrlrgwqvpaftlggeatdivvmr
imcrrgfemdfaellledykaslkylsdhpk

Timeline for d2dgmb_:

• d2dgmb_ first appeared in SCOP 1.73, called d2dgmb1
  
• d2dgmb_ appears in SCOPe 2.01
  
• d2dgmb_ appears in SCOPe 2.03
  
• d2dgmb_ appears in the current release, SCOPe 2.08