SCOPe 2.05: Domain d2dd8s1: 2dd8 S:321-512

Lineage for d2dd8s1 (2dd8 S:321-512)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily)
   core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542

4. Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family)
   automatically mapped to Pfam PF09408

5. Family d.318.1.1: SARS receptor-binding domain-like [143588] (2 proteins)
   part of PfamB PB000266

6. Protein Spike protein S1 [143589] (1 species)

7. Species SARS coronavirus [TaxId:227859] [143590] (8 PDB entries)
   Uniprot P59594 320-502! Uniprot P59594 321-512! Uniprot P59594 323-502

8. Domain d2dd8s1: 2dd8 S:321-512 [131393]
   Other proteins in same PDB: d2dd8h1, d2dd8h2, d2dd8l1, d2dd8l2
   complexed with nag, po4

Details for d2dd8s1

PDB Entry: 2dd8, 2.3 Å

PDB Description: crystal structure of sars-cov spike receptor-binding domain complexed with neutralizing antibody

PDB Compounds: (S:) Spike glycoprotein

SCOPe Domain Sequences for d2dd8s1:

Sequence; same for both SEQRES and ATOM records:

>d2dd8s1 d.318.1.1 (S:321-512) Spike protein S1 {SARS coronavirus [TaxId: 227859]}
nlcpfgevfnatkfpsvyawerkkisncvadysvlynstffstfkcygvsatklndlcfs
nvyadsfvvkgddvrqiapgqtgviadynyklpddfmgcvlawntrnidatstgnynyky
rylrhgklrpferdisnvpfspdgkpctppalncywplndygfytttgigyqpyrvvvls
fellnapatvcg

Timeline for d2dd8s1:

• d2dd8s1 first appeared in SCOP 1.73
  
• d2dd8s1 appears in SCOPe 2.04
  
• d2dd8s1 appears in SCOPe 2.06
  
• d2dd8s1 appears in the current release, SCOPe 2.08