Lineage for d2dd8s1 (2dd8 S:321-512)

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1947943Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily)
    core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542
  4. 1947944Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family) (S)
    automatically mapped to Pfam PF09408
  5. 1947945Family d.318.1.1: SARS receptor-binding domain-like [143588] (2 proteins)
    part of PfamB PB000266
  6. 1947946Protein Spike protein S1 [143589] (1 species)
  7. 1947947Species SARS coronavirus [TaxId:227859] [143590] (8 PDB entries)
    Uniprot P59594 320-502! Uniprot P59594 321-512! Uniprot P59594 323-502
  8. 1947950Domain d2dd8s1: 2dd8 S:321-512 [131393]
    Other proteins in same PDB: d2dd8h1, d2dd8h2, d2dd8l1, d2dd8l2
    complexed with nag, po4

Details for d2dd8s1

PDB Entry: 2dd8 (more details), 2.3 Å

PDB Description: Crystal Structure of SARS-CoV Spike Receptor-Binding Domain Complexed with Neutralizing Antibody
PDB Compounds: (S:) Spike glycoprotein

SCOPe Domain Sequences for d2dd8s1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2dd8s1 d.318.1.1 (S:321-512) Spike protein S1 {SARS coronavirus [TaxId: 227859]}
nlcpfgevfnatkfpsvyawerkkisncvadysvlynstffstfkcygvsatklndlcfs
nvyadsfvvkgddvrqiapgqtgviadynyklpddfmgcvlawntrnidatstgnynyky
rylrhgklrpferdisnvpfspdgkpctppalncywplndygfytttgigyqpyrvvvls
fellnapatvcg

SCOPe Domain Coordinates for d2dd8s1:

Click to download the PDB-style file with coordinates for d2dd8s1.
(The format of our PDB-style files is described here.)

Timeline for d2dd8s1: