Lineage for d2dcda_ (2dcd A:)

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2926589Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 2926590Superfamily d.3.1: Cysteine proteinases [54001] (24 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 2926591Family d.3.1.1: Papain-like [54002] (26 proteins)
  6. 2926957Protein automated matches [190264] (12 species)
    not a true protein
  7. 2926965Species Cow (Bos taurus) [TaxId:9913] [187053] (8 PDB entries)
  8. 2926973Domain d2dcda_: 2dcd A: [131372]
    automated match to d1itoa_
    complexed with 78a, gol, po4

Details for d2dcda_

PDB Entry: 2dcd (more details), 2.5 Å

PDB Description: x-ray crystal structure analysis of bovine spleen cathepsin b-ca078 complex
PDB Compounds: (A:) cathepsin b

SCOPe Domain Sequences for d2dcda_:

Sequence, based on SEQRES records: (download)

>d2dcda_ d.3.1.1 (A:) automated matches {Cow (Bos taurus) [TaxId: 9913]}
lpesfdareqwpncptikeirdqgscgscwafgaveaisdricihsngrvnvevsaedml
tccggecgdgcnggfpsgawnfwtkkglvsgglynshvgcrpysippcehhvngsrppct
gegdtpkcsktcepgyspsykedkhfgcssysvannekeimaeiykngpvegafsvysdf
llyksgvyqhvsgeimgghairilgwgvengtpywlvgnswntdwgdngffkilrgqdhc
gieseivagmpct

Sequence, based on observed residues (ATOM records): (download)

>d2dcda_ d.3.1.1 (A:) automated matches {Cow (Bos taurus) [TaxId: 9913]}
lpesfdareqwpncptikeirdqgscgscwafgaveaisdricihsnvnvevsaedmltc
cggecgdgcnggfpsgawnfwtkkglvsgglynshvgcrpysippcehhvngsrppctge
gdtpkcsktcepgyspsykedkhfgcssysvannekeimaeiykngpvegafsvysdfll
yksgvyqhvsgeimgghairilgwgvengtpywlvgnswntdwgdngffkilrgqdhcgi
eseivagmpct

SCOPe Domain Coordinates for d2dcda_:

Click to download the PDB-style file with coordinates for d2dcda_.
(The format of our PDB-style files is described here.)

Timeline for d2dcda_: