SCOPe 2.07: Domain d2d6fa2: 2d6f A:84-435

Lineage for d2d6fa2 (2d6f A:84-435)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.88: Glutaminase/Asparaginase [53773] (1 superfamily)
   consists of two non-similar alpha/beta domains, 3 layers (a/b/a) each
   Domain 1 has mixed beta-sheet of 6 strands, order 213456, strand 6 is antiparallel to the rest; left-handed crossover connection between strands 4 and 5
   Domain 2 has parallel beta-sheet of 4 strands, order 1234

4. Superfamily c.88.1: Glutaminase/Asparaginase [53774] (2 families)

5. Family c.88.1.1: Glutaminase/Asparaginase [53775] (4 proteins)
   automatically mapped to Pfam PF00710

6. Protein Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD [142776] (2 species)

7. Species Methanobacterium thermoautotrophicum [TaxId:145262] [142778] (1 PDB entry)
   Uniprot O26802 84-435

8. Domain d2d6fa2: 2d6f A:84-435 [131304]
   Other proteins in same PDB: d2d6fa1, d2d6fb1, d2d6fb2, d2d6fc1, d2d6fc2, d2d6fc3, d2d6fd1, d2d6fd2, d2d6fd3
   protein/RNA complex; complexed with zn

Details for d2d6fa2

PDB Entry: 2d6f, 3.15 Å

PDB Description: Crystal structure of Glu-tRNA(Gln) amidotransferase in the complex with tRNA(Gln)

PDB Compounds: (A:) Glutamyl-tRNA(Gln) amidotransferase subunit D

SCOPe Domain Sequences for d2d6fa2:

Sequence; same for both SEQRES and ATOM records:

>d2d6fa2 c.88.1.1 (A:84-435) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Methanobacterium thermoautotrophicum [TaxId: 145262]}
aaedpelpdvsiistggtvasiidyrtgavhpaftaddllranpelldianirgravfni
lsenmkpeywvetaravygeikdgadgvvvahgtdtmhytsaalsfmlrtpvpvvftgaq
rssdrpssdaslniqcsvraatseiaevtvcmhatmddlschlhrgvkvrkmhtsrrdtf
rsmnalplaevtpdgikileenyrkrgsdelelsdrveervafiksypgispdiikwhld
egyrgiviegtglghcpdtlipvigeahdmgvpvamtsqclngrvnmnvystgrrllqag
vipcddmlpevayvkmcwvlgqtddpemaremmreniageinertsiayfrg

Timeline for d2d6fa2:

• d2d6fa2 first appeared in SCOP 1.73
  
• d2d6fa2 appears in SCOPe 2.06
  
• d2d6fa2 appears in the current release, SCOPe 2.08