SCOPe 2.08: Domain d2ca1b_: 2ca1 B:

Lineage for d2ca1b_ (2ca1 B:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.254: Nucleocapsid protein dimerization domain [103067] (1 superfamily)
   dimer of alpha-beta(2)-alpha motifs ; 2 layers, alpha/beta

4. Superfamily d.254.1: Nucleocapsid protein dimerization domain [103068] (3 families)

5. Family d.254.1.2: Coronavirus nucleocapsid protein [143508] (2 proteins)
   C-terminal part of Pfam PF00937

6. Protein Coronavirus nucleocapsid protein [143509] (2 species)

7. Species Avian infectious bronchitis virus [TaxId:11120] [143510] (3 PDB entries)
   Uniprot P32923 222-333! Uniprot P32923 226-332! Uniprot Q4ZJS4 218-326
   different strains

8. Domain d2ca1b_: 2ca1 B: [130148]
   automated match to d2ca1a1

Details for d2ca1b_

PDB Entry: 2ca1, 2.6 Å

PDB Description: crystal structure of the ibv coronavirus nucleocapsid

PDB Compounds: (B:) nucleocapsid protein

SCOPe Domain Sequences for d2ca1b_:

Sequence; same for both SEQRES and ATOM records:

>d2ca1b_ d.254.1.2 (B:) Coronavirus nucleocapsid protein {Avian infectious bronchitis virus [TaxId: 11120]}
rryckrtippnyrvdqvfgprtkgkegnfgddkmneegikdgrvtamlnlvpsshaclfg
srvtpklqldglhlrfefttvvpcddpqfdnyvkicdqcvdg

Timeline for d2ca1b_:

• d2ca1b_ first appeared in SCOP 1.73, called d2ca1b1
  
• d2ca1b_ appears in SCOPe 2.07