SCOPe 2.06: Domain d2c8nd2: 2c8n D:17-386

Lineage for d2c8nd2 (2c8n D:17-386)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.3: beta-glycanases [51487] (27 proteins)
   consist of a number of sequence families

6. Protein Alpha-L-arabinofuranosidase, catalytic domain [102075] (2 species)
   glycosyl hydrolase family 51

7. Species Clostridium thermocellum [TaxId:1515] [141779] (2 PDB entries)
   Uniprot Q4CJG5 17-386

8. Domain d2c8nd2: 2c8n D:17-386 [130116]
   Other proteins in same PDB: d2c8na1, d2c8nb1, d2c8nc1, d2c8nd1, d2c8ne1, d2c8nf1
   automated match to d2c7fa2
   complexed with edo

Details for d2c8nd2

PDB Entry: 2c8n, 2.9 Å

PDB Description: the structure of a family 51 arabinofuranosidase, araf51, from clostridium thermocellum in complex with 1,3-linked arabinoside of xylobiose.

PDB Compounds: (D:) alpha-l-arabinofuranosidase

SCOPe Domain Sequences for d2c8nd2:

Sequence; same for both SEQRES and ATOM records:

>d2c8nd2 c.1.8.3 (D:17-386) Alpha-L-arabinofuranosidase, catalytic domain {Clostridium thermocellum [TaxId: 1515]}
idkriygsfvehlgravydglyqpgnsksdedgfrkdvielvkelnvpiirypggnfvsn
yfwedgvgpvedrprrldlawksiepnqvginefakwckkvnaeimmavnlgtrgisdac
nlleycnhpggskysdmrikhgvkephnikvwclgnamdgpwqvghktmdeygriaeeta
ramkmidpsielvacgssskdmptfpqweatvldyaydyvdyislhqyygnkendtadfl
aksddlddfirsviatcdyikakkrskkdiylsfdewnvwyhsnnedanimqnepwriap
pllediytfedallvglmlitlmkhadrikiaclaqlinviapivternggaawrqtify
pfmhaskygr

Timeline for d2c8nd2:

• d2c8nd2 first appeared in SCOP 1.73
  
• d2c8nd2 appears in SCOPe 2.05
  
• d2c8nd2 appears in SCOPe 2.07
  
• d2c8nd2 appears in the current release, SCOPe 2.08