Lineage for d2c8ic1 (2c8i C:1-238)

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2075417Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. 2075626Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families) (S)
  5. 2075627Family b.121.4.1: Picornaviridae-like VP (VP1, VP2, VP3 and VP4) [88634] (10 protein domains)
    the order of the chains N-VP0-VP3-VP1-C is as in the polyprotein; VP0 is cleaved later upon capsid assembly to VP4 and VP2
    there is a different order in the shuffled genome of insect picorna-like proteins (Cricket paralysis virus)
  6. 2075647Protein Human enterovirus B coat proteins [88635] (4 species)
  7. 2075661Species Human echovirus 11 [TaxId:12078] [74890] (3 PDB entries)
  8. 2075669Domain d2c8ic1: 2c8i C:1-238 [130104]
    Other proteins in same PDB: d2c8ie1, d2c8ie2, d2c8ie3, d2c8ie4
    automatically matched to d1h8tc_

Details for d2c8ic1

PDB Entry: 2c8i (more details), 14 Å

PDB Description: complex of echovirus type 12 with domains 1, 2, 3 and 4 of its receptor decay accelerating factor (cd55) by cryo electron microscopy at 16 a
PDB Compounds: (C:) echovirus 11 coat protein vp3

SCOPe Domain Sequences for d2c8ic1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2c8ic1 b.121.4.1 (C:1-238) Human enterovirus B coat proteins {Human echovirus 11 [TaxId: 12078]}

SCOPe Domain Coordinates for d2c8ic1:

Click to download the PDB-style file with coordinates for d2c8ic1.
(The format of our PDB-style files is described here.)

Timeline for d2c8ic1: