SCOP 1.73: Domain d2c3ya1: 2c3y A:2-258

Lineage for d2c3ya1 (2c3y A:2-258)

1. Root: SCOP 1.73

2. Class c: Alpha and beta proteins (a/b) [51349] (141 folds)

3. Fold c.36: Thiamin diphosphate-binding fold (THDP-binding) [52517] (1 superfamily)
   3 layers: a/b/a; parallel beta-sheet of 6 strands, order 213465

4. Superfamily c.36.1: Thiamin diphosphate-binding fold (THDP-binding) [52518] (8 families)
   there are two different functional modules of this fold: pyridine-binding (Pyr) and pyrophosphate-binding (PP) modules
   two Pyr and two PP modules assemble together in a conserved heterotetrameric core that binds two THDP coenzyme molecules

5. Family c.36.1.8: PFOR Pyr module [88746] (1 protein)
   domains VI, I and II are arranged in the same way as the TK PP, Pyr and C domains

6. Protein Pyruvate-ferredoxin oxidoreductase, PFOR, domain I [88747] (1 species)

7. Species Desulfovibrio africanus [TaxId:873] [88748] (9 PDB entries)

8. Domain d2c3ya1: 2c3y A:2-258 [129780]
   Other proteins in same PDB: d2c3ya2, d2c3ya3, d2c3ya4, d2c3ya5, d2c3yb2, d2c3yb3, d2c3yb4, d2c3yb5
   automatically matched to d1b0pa1
   complexed with ca, co2, htl, mg, sf4

Details for d2c3ya1

PDB Entry: 2c3y, 1.93 Å

PDB Description: crystal structure of the radical form of pyruvate:ferredoxin oxidoreductase from desulfovibrio africanus

PDB Compounds: (A:) pyruvate-ferredoxin oxidoreductase

SCOP Domain Sequences for d2c3ya1:

Sequence; same for both SEQRES and ATOM records:

>d2c3ya1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]}
gkkmmttdgntatahvayamsevaaiypitpsstmgeeaddwaaqgrknifgqtltirem
qseagaagavhgalaagaltttftasqglllmipnmykisgellpgvfhvtaraiaahal
sifgdhqdiyaarqtgfamlasssvqeahdmalvahlaaiesnvpfmhffdgfrtsheiq
kievldyadmaslvnqkalaefraksmnpehphvrgtaqnpdiyfqgreaanpyylkvpg
ivaeymqkvasltgrsy

Timeline for d2c3ya1:

• d2c3ya1 is new in SCOP 1.73
  
• d2c3ya1 appears in SCOP 1.75
  
• d2c3ya1 appears in the current release, SCOPe 2.08