SCOPe 2.08: Domain d2bvim1: 2bvi M:5-636

Lineage for d2bvim1 (2bvi M:5-636)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.2: Group II dsDNA viruses VP [49749] (4 families)
   duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits
   trimeric; in the trimers, the domains are arranged around pseudo six-fold axis

5. Family b.121.2.2: Adenovirus hexon [49753] (3 proteins)
   each domain is heavily decorated with many insertions

6. Protein Adenovirus hexon, N-terminal domain [418930] (2 species)

7. Species Human adenovirus type 5 [TaxId:28285] [419364] (3 PDB entries)

8. Domain d2bvim1: 2bvi M:5-636 [129272]
   Other proteins in same PDB: d2bvif2, d2bvig2, d2bvih2, d2bvii2, d2bvij2, d2bvik2, d2bvil2, d2bvim2, d2bvin2, d2bvio2, d2bvip2, d2bviq2
   has additional subdomain(s) that are not in the common domain

Details for d2bvim1

PDB Entry: 2bvi, 10 Å

PDB Description: The quasi-atomic model of Human Adenovirus type 5 capsid (Part 1)

PDB Compounds: (M:) hexon protein

SCOPe Domain Sequences for d2bvim1:

Sequence, based on SEQRES records:

>d2bvim1 b.121.2.2 (M:5-636) Adenovirus hexon, N-terminal domain {Human adenovirus type 5 [TaxId: 28285]}
mmpqwsymhisgqdaseylspglvqfaratetyfslnnkfrnptvapthdvttdrsqrlt
lrfipvdredtaysykarftlavgdnrvldmastyfdirgvldrgptfkpysgtaynala
pkgapnpcewdeaataleinleeedddnedevdeqaeqqkthvfgqapysginitkegiq
igvegqtpkyadktfqpepqigesqwyeteinhaagrvlkkttpmkpcygsyakptneng
gqgilvkqqngklesqvemqffstteatagngdnltpkvvlysedvdietpdthisympt
ikegnsrelmgqqsmpnrpnyiafrdnfiglmyynstgnmgvlagqasqlnavvdlqdrn
telsyqllldsigdrtryfsmwnqavdsydpdvriienhgtedelpnycfplggvintet
ltkvkpktgqengwekdatefsdkneirvgnnfameinlnanlwrnflysnialylpdkl
kyspsnvkisdnpntydymnkrvvapglvdcyinlgarwsldymdnvnpfnhhrnaglry
rsmllgngryvpfhiqvpqkffaiknllllpgsytyewnfrkdvnmvlqsslgndlrvdg
asikfdsiclyatffpmahntastleamlrnd

Sequence, based on observed residues (ATOM records):

>d2bvim1 b.121.2.2 (M:5-636) Adenovirus hexon, N-terminal domain {Human adenovirus type 5 [TaxId: 28285]}
mmpqwsymhisgqdaseylspglvqfaratetyfslnnkfrnptvapthdvttdrsqrlt
lrfipvdredtaysykarftlavgdnrvldmastyfdirgvldrgptfkpysgtaynala
pkgapnpcewdthvfgqapysginitkegiqigkyadktfqpepqigesqwyeteinhaa
grvlkkttpmkpcygsyakptnenggqgilvesqvemqffsttnltpkvvlysedvdiet
pdthisymptikegnsrelmgqqsmpnrpnyiafrdnfiglmyynstgnmgvlagqasql
navvdlqdrntelsyqllldsigdrtryfsmwnqavdsydpdvriienhgtedelpnycf
plggvintetltkvkpgwekdafsdkneirvgnnfameinlnanlwrnflysnialylpd
klkyspsnvkisdnpntydymnkrvvapglvdcyinlgarwsldymdnvnpfnhhrnagl
ryrsmllgngryvpfhiqvpqkffaiknllllpgsytyewnfrkdvnmvlqsslgndlrv
dgasikfdsiclyatffpmahntastleamlrnd

Timeline for d2bvim1:

• d2bvim1 first appeared in SCOP 1.73
  
• d2bvim1 appears in SCOPe 2.07