SCOPe 2.06: Domain d2bmra2: 2bmr A:153-439

Lineage for d2bmra2 (2bmr A:153-439)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.129: TBP-like [55944] (11 superfamilies)
   beta-alpha-beta(4)-alpha

4. Superfamily d.129.3: Bet v1-like [55961] (11 families)
   contains a single copy of this fold with a alpha-beta2 insertion after the first helix; there is a cavity between the beta-sheet and the long C-terminal helix

5. Family d.129.3.3: Ring hydroxylating alpha subunit catalytic domain [55969] (7 proteins)
   Pfam PF00848; contains a few insertion and C-terminal extension compared with Bet v1

6. Protein Nitrobenzene dioxygenase alpha subunit, NBDO-alpha [143829] (1 species)

7. Species Comamonas sp. JS765 [TaxId:58226] [143830] (3 PDB entries)
   Uniprot Q8RTL4 153-439

8. Domain d2bmra2: 2bmr A:153-439 [128811]
   Other proteins in same PDB: d2bmra1, d2bmrb_
   automated match to d2bmoa2
   complexed with 3nt, edo, eoh, fe, fes, ni

Details for d2bmra2

PDB Entry: 2bmr, 1.5 Å

PDB Description: the crystal structure of nitrobenzene dioxygenase in complex with 3- nitrotoluene

PDB Compounds: (A:) oxygenase-alpha nbdo

SCOPe Domain Sequences for d2bmra2:

Sequence; same for both SEQRES and ATOM records:

>d2bmra2 d.129.3.3 (A:153-439) Nitrobenzene dioxygenase alpha subunit, NBDO-alpha {Comamonas sp. JS765 [TaxId: 58226]}
eapplidylgdaawyleptfkysgglelvgppgkvvvkanwksfaenfvgdgyhvgwtha
aalragqsvfssiagnaklppegaglqmtskygsgmgvfwgyysgnfsadmipdlmafga
akqeklakeigdvrariyrsflngtifpnnsfltgsaafrvwnpidenttevwtyafvek
dmpedlkrrvadavqrsigpagfwesddnenmetmsqngkkyqssnidqiaslgfgkdvy
gdecypgvvgksaigetsyrgfyrayqahisssnwaefenasrnwhi

Timeline for d2bmra2:

• d2bmra2 first appeared in SCOP 1.73
  
• d2bmra2 appears in SCOPe 2.05
  
• d2bmra2 appears in SCOPe 2.07
  
• d2bmra2 appears in the current release, SCOPe 2.08