Lineage for d2bmkl2 (2bmk L:108-214)

  1. Root: SCOPe 2.03
  2. 1287432Class b: All beta proteins [48724] (174 folds)
  3. 1287433Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 1287434Superfamily b.1.1: Immunoglobulin [48726] (5 families) (S)
  5. 1290587Family b.1.1.2: C1 set domains (antibody constant domain-like) [48942] (24 proteins)
  6. 1293251Protein Immunoglobulin light chain kappa constant domain, CL-kappa [88566] (4 species)
  7. 1293486Species Mouse (Mus musculus) [TaxId:10090] [88567] (364 PDB entries)
    Uniprot P01837# KAC_MOUSE Ig kappa chain C region; 99% sequence identity ! SQ NA # natural chimera; best hits are: Uniprot P01637 (Ig kappa chain V-V region T1) and Uniprot P01837 (Ig kappa chain C region) ! Uniprot P01837 # KAC_MOUSE Ig kappa chain C region ! Uniprot P01837 # KAC_MOUSE (P01837) Ig kappa chain C region ! SQ NA # part of Fab 28 against HIV-1 RT ! Uniprot P01837 # ! KAC_MOUSE Ig kappa chain C region
  8. 1293656Domain d2bmkl2: 2bmk L:108-214 [128801]
    Other proteins in same PDB: d2bmka1, d2bmkb1, d2bmkb2, d2bmkh1, d2bmkh2, d2bmkl1
    automatically matched to d1dqdl2
    complexed with iod, pdd

Details for d2bmkl2

PDB Entry: 2bmk (more details), 2.3 Å

PDB Description: fab fragment of plp-dependent catalytic antibody 15a9 in complex with phosphopyridoxyl-d-alanine
PDB Compounds: (L:) fab fragment of catalytic antibody 15a9, light chain

SCOPe Domain Sequences for d2bmkl2:

Sequence; same for both SEQRES and ATOM records: (download)

>d2bmkl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}
radaaptvsifppsseqltsggasvvcflnnfypkdinvkwkidgserqngvlnswtdqd
skdstysmsstltltkdeyerhnsytceathktstspivksfnrnec

SCOPe Domain Coordinates for d2bmkl2:

Click to download the PDB-style file with coordinates for d2bmkl2.
(The format of our PDB-style files is described here.)

Timeline for d2bmkl2: