SCOPe 2.05: Domain d2bgwa2: 2bgw A:16-148

Lineage for d2bgwa2 (2bgw A:16-148)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.52: Restriction endonuclease-like [52979] (4 superfamilies)
   core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest

4. Superfamily c.52.1: Restriction endonuclease-like [52980] (35 families)

5. Family c.52.1.20: XPF/Rad1/Mus81 nuclease [89716] (3 proteins)

6. Protein XPF endonuclease [142447] (1 species)

7. Species Aeropyrum pernix [TaxId:56636] [142448] (2 PDB entries)
   Uniprot Q9YC15 16-148

8. Domain d2bgwa2: 2bgw A:16-148 [128501]
   Other proteins in same PDB: d2bgwa1, d2bgwb1
   protein/DNA complex; complexed with mg, so4

Details for d2bgwa2

PDB Entry: 2bgw, 2.8 Å

PDB Description: xpf from aeropyrum pernix, complex with dna

PDB Compounds: (A:) xpf endonuclease

SCOPe Domain Sequences for d2bgwa2:

Sequence; same for both SEQRES and ATOM records:

>d2bgwa2 c.52.1.20 (A:16-148) XPF endonuclease {Aeropyrum pernix [TaxId: 56636]}
ggrprvyvdvreerspvpsileslgvqvipkqlpmgdylvsdsiiverktssdfakslfd
grlfeqasrlaehyetvfiivegppvprryrgrerslyaamaalqldygirlmntmdpkg
talvieslarlst

Timeline for d2bgwa2:

• d2bgwa2 first appeared in SCOP 1.73
  
• d2bgwa2 appears in SCOPe 2.04
  
• d2bgwa2 appears in SCOPe 2.06
  
• d2bgwa2 appears in the current release, SCOPe 2.08