SCOPe 2.05: Domain d2bgka1: 2bgk A:11-278

Lineage for d2bgka1 (2bgk A:11-278)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
   core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
   The nucleotide-binding modes of this and the next two folds/superfamilies are similar

4. Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families)

5. Family c.2.1.2: Tyrosine-dependent oxidoreductases [51751] (71 proteins)
   also known as short-chain dehydrogenases and SDR family
   parallel beta-sheet is extended by 7th strand, order 3214567; left-handed crossover connection between strands 6 and 7

6. Protein Rhizome secoisolariciresinol dehydrogenase [141898] (1 species)

7. Species Mayapple (Podophyllum peltatum) [TaxId:35933] [141899] (1 PDB entry)
   Uniprot Q94KL8 11-278

8. Domain d2bgka1: 2bgk A:11-278 [128480]
   Other proteins in same PDB: d2bgkb_

Details for d2bgka1

PDB Entry: 2bgk, 1.6 Å

PDB Description: x-ray structure of apo-secoisolariciresinol dehydrogenase

PDB Compounds: (A:) rhizome secoisolariciresinol dehydrogenase

SCOPe Domain Sequences for d2bgka1:

Sequence; same for both SEQRES and ATOM records:

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}
tnrlqdkvaiitggaggigettaklfvrygakvviadiaddhgqkvcnnigspdvisfvh
cdvtkdedvrnlvdttiakhgkldimfgnvgvlsttpysileagnedfkrvmdinvygaf
lvakhaarvmipakkgsivftasissftagegvshvytatkhavlglttslctelgeygi
rvncvspyivasplltdvfgvdssrveelahqaanlkgtllraedvadavaylagdesky
vsglnlvidggytrtnpafptalkhgla

Timeline for d2bgka1:

• d2bgka1 first appeared in SCOP 1.73
  
• d2bgka1 appears in SCOPe 2.04
  
• d2bgka1 appears in SCOPe 2.06
  
• d2bgka1 appears in the current release, SCOPe 2.08