SCOPe 2.05: Domain d2bggb1: 2bgg B:93-408

Lineage for d2bggb1 (2bgg B:93-408)

1. Root: SCOPe 2.05

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (15 families)
   consists of one domain of this fold

5. Family c.55.3.10: PIWI domain [110640] (4 proteins)
   Pfam PF02171

6. Protein Hypothetical protein AF1318 [142503] (1 species)

7. Species Archaeoglobus fulgidus [TaxId:2234] [142504] (3 PDB entries)
   Uniprot O28951 11-427

8. Domain d2bggb1: 2bgg B:93-408 [128479]
   automatically matched to 1W9H A:93-408
   protein/RNA complex; complexed with mn

Details for d2bggb1

PDB Entry: 2bgg, 2.2 Å

PDB Description: the structure of a piwi protein from archaeoglobus fulgidus complexed with a 16nt sirna duplex.

PDB Compounds: (B:) protein af1318

SCOPe Domain Sequences for d2bggb1:

Sequence, based on SEQRES records:

>d2bggb1 c.55.3.10 (B:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]}
fdsiksqvdnaidtgvdgimlvlpeyntplyyklksylinsipsqfmrydilsnrnltfy
vdnllvqfvsklggkpwilnvdpekgsdiiigtgatridnvnlfcfamvfkkdgtmlwne
ispivtsseyltylkstikkvvygfkksnpdwdvekltlhvsgkrpkmkdgetkilketv
eelkkqemvsrdvkyailhlnethpfwvmgdpnnrfhpyegtkvklsskrylltllqpyl
krnglemvtpikplsveivsdnwtseeyyhnvheildeiyylskmnwrgfrsrnlpvtvn
ypklvagiianvnryg

Sequence, based on observed residues (ATOM records):

>d2bggb1 c.55.3.10 (B:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]}
fdsiksqvdnaidtgvdgimlvlpeyntplyyklksylinsipsqfmrydilsnrnltfy
vdnllvqfvsklggkpwilnvdpekgsdiiigtgatridnvnlfcfamvfkkdgtmlwne
ispivtsseyltylkstikkvvygfkksnpdwdvekltlhvsgkrpkmkdgetkilketv
eelkkqemvsrdvkyailhlnethpfwvmgtkvklsskrylltllqvtpikplsveivsd
nwtseeyyhnvheildeiyylskmnwrgfrsrnlpvtvnypklvagiianvnryg

Timeline for d2bggb1:

• d2bggb1 first appeared in SCOP 1.73
  
• d2bggb1 appears in SCOPe 2.04
  
• d2bggb1 does not appear in SCOPe 2.06