SCOP 1.73: Domain d2bgga1: 2bgg A:93-408

Lineage for d2bgga1 (2bgg A:93-408)

1. Root: SCOP 1.73

2. Class c: Alpha and beta proteins (a/b) [51349] (141 folds)

3. Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
   3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest

4. Superfamily c.55.3: Ribonuclease H-like [53098] (12 families)
   consists of one domain of this fold

5. Family c.55.3.10: PIWI domain [110640] (3 proteins)
   Pfam PF02171

6. Protein Hypothetical protein AF1318 [142503] (1 species)

7. Species Archaeoglobus fulgidus [TaxId:2234] [142504] (3 PDB entries)

8. Domain d2bgga1: 2bgg A:93-408 [128478]
   automatically matched to 1W9H A:93-408
   complexed with mn

Details for d2bgga1

PDB Entry: 2bgg, 2.2 Å

PDB Description: the structure of a piwi protein from archaeoglobus fulgidus complexed with a 16nt sirna duplex.

PDB Compounds: (A:) protein af1318

SCOP Domain Sequences for d2bgga1:

Sequence, based on SEQRES records:

>d2bgga1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]}
fdsiksqvdnaidtgvdgimlvlpeyntplyyklksylinsipsqfmrydilsnrnltfy
vdnllvqfvsklggkpwilnvdpekgsdiiigtgatridnvnlfcfamvfkkdgtmlwne
ispivtsseyltylkstikkvvygfkksnpdwdvekltlhvsgkrpkmkdgetkilketv
eelkkqemvsrdvkyailhlnethpfwvmgdpnnrfhpyegtkvklsskrylltllqpyl
krnglemvtpikplsveivsdnwtseeyyhnvheildeiyylskmnwrgfrsrnlpvtvn
ypklvagiianvnryg

Sequence, based on observed residues (ATOM records):

>d2bgga1 c.55.3.10 (A:93-408) Hypothetical protein AF1318 {Archaeoglobus fulgidus [TaxId: 2234]}
fdsiksqvdnaidtgvdgimlvlpeyntplyyklksylinsipsqfmrydilsnrnltfy
vdnllvqfvsklggkpwilnvdpekgsdiiigtgatridnvnlfcfamvfkkdgtmlwne
ispivtsseyltylkstikkvvygfkksnpdwdvekltlhvsgkrpkmkdgetkilketv
eelkkqemvsrdvkyailhlnethpfwvmegtkvklsskrylltllqpyvtpikplsvei
vsdnwtseeyyhnvheildeiyylskmnwrgfrsrnlpvtvnypklvagiianvnryg

Timeline for d2bgga1:

• d2bgga1 is new in SCOP 1.73
  
• d2bgga1 appears in SCOP 1.75
  
• d2bgga1 last appears in SCOPe 2.05