Lineage for d2bera1 (2ber A:405-505)

  1. Root: SCOPe 2.01
  2. 929298Class b: All beta proteins [48724] (174 folds)
  3. 929299Fold b.1: Immunoglobulin-like beta-sandwich [48725] (28 superfamilies)
    sandwich; 7 strands in 2 sheets; greek-key
    some members of the fold have additional strands
  4. 937486Superfamily b.1.18: E set domains [81296] (24 families) (S)
    "Early" Ig-like fold families possibly related to the immunoglobulin and/or fibronectin type III superfamilies
  5. 937592Family b.1.18.2: E-set domains of sugar-utilizing enzymes [81282] (20 proteins)
    domains of unknown function associated with different type of catalytic domains in a different sequential location
    subgroup of the larger IPT/TIG domain family
  6. 937829Protein Sialidase, "linker" domain [49237] (1 species)
    follows the catalytic six-bladed beta-propeller domain
  7. 937830Species Micromonospora viridifaciens [TaxId:1881] [49238] (6 PDB entries)
    Uniprot Q02834 47-647
  8. 937832Domain d2bera1: 2ber A:405-505 [128386]
    Other proteins in same PDB: d2bera2, d2bera3
    automatically matched to d1eut_1
    complexed with na, slb; mutant

Details for d2bera1

PDB Entry: 2ber (more details), 1.8 Å

PDB Description: y370g active site mutant of the sialidase from micromonospora viridifaciens in complex with beta-neu5ac (sialic acid).
PDB Compounds: (A:) bacterial sialidase

SCOPe Domain Sequences for d2bera1:

Sequence; same for both SEQRES and ATOM records: (download)

>d2bera1 b.1.18.2 (A:405-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}
capftipdvalepgqqvtvpvavtnqsgiavpkpslqldaspdwqvqgsveplmpgrqak
gqvtitvpagttpgryrvgatlrtsagnasttftvtvglld

SCOPe Domain Coordinates for d2bera1:

Click to download the PDB-style file with coordinates for d2bera1.
(The format of our PDB-style files is described here.)

Timeline for d2bera1: