SCOPe 2.08: Domain d2bcoa1: 2bco A:4-342

Lineage for d2bcoa1 (2bco A:4-342)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
   core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops

4. Superfamily c.56.5: Zn-dependent exopeptidases [53187] (10 families)
   core: mixed beta-sheet of 8 strands, order 12435867; strands 2, 6 & 7 are antiparallel to the rest

5. Family c.56.5.7: AstE/AspA-like [142526] (3 proteins)
   Pfam PF04952; Succinylglutamate desuccinylase / Aspartoacylase family; contains extra C-terminal domain, new variant of the Barrel-sandwich hybrid fold (51229)

6. Protein Succinylglutamate desuccinylase AstE [142527] (4 species)

7. Species Vibrio parahaemolyticus [TaxId:670] [142529] (1 PDB entry)
   Uniprot Q87Q40 4-342

8. Domain d2bcoa1: 2bco A:4-342 [128302]
   complexed with zn

Details for d2bcoa1

PDB Entry: 2bco, 2.33 Å

PDB Description: X-ray structure of succinylglutamate desuccinalase from Vibrio Parahaemolyticus (RIMD 2210633) at the resolution 2.3 A, Northeast Structural Genomics Target Vpr14

PDB Compounds: (A:) Succinylglutamate desuccinylase

SCOPe Domain Sequences for d2bcoa1:

Sequence, based on SEQRES records:

>d2bcoa1 c.56.5.7 (A:4-342) Succinylglutamate desuccinylase AstE {Vibrio parahaemolyticus [TaxId: 670]}
slfrqsfltdtldvhidvapaeqvlsngvqlklyqrgvlevipenptqetkniiiscgih
gdetapmelvdsiikdiesgfqkvdarclfiiahpestlahtrfleenlnrlfdekehep
tkelaiadtlkllvrdfyqdtepktrwhldlhcairgskhytfavspktrhpvrskalvd
fldsahieavllsnspsstfswysaenysaqaltmelgrvarigenaldrltafdlalrn
liaeaqpehlskpcikyrvsrtivrlhddfdfmfddnvenftsfvhgevfghdgdkplma
kndneaivfpnrhvaigqraalmvcevktrfeegelvyd

Sequence, based on observed residues (ATOM records):

>d2bcoa1 c.56.5.7 (A:4-342) Succinylglutamate desuccinylase AstE {Vibrio parahaemolyticus [TaxId: 670]}
slfrqsfltdtldvhivapaeqvlsngvqlklyqrgvlevipenptqetkniiiscgihg
detapmelvdsiikdiesgfqkvdarclfiiahpestlahtrfleenlnrlfdekehept
kelaiadtlkllvrdfyqdtepktrwhldlhcairgskhytfavspktrhpvrskalvdf
ldsahieavllsnspsstfswysaenysaqaltmelgrvarigenaldrltafdlalrnl
iaeaqpehlskpcikyrvsrtivrlhddfdfmfddnvenftsfvhgevfghdgdkplmak
ndneaivfpnrhvaigqraalmvcevktrfeegelvyd

Timeline for d2bcoa1:

• d2bcoa1 first appeared in SCOP 1.73
  
• d2bcoa1 appears in SCOPe 2.07