Lineage for d2b0ja2 (2b0j A:1-242)

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2841004Fold c.2: NAD(P)-binding Rossmann-fold domains [51734] (1 superfamily)
    core: 3 layers, a/b/a; parallel beta-sheet of 6 strands, order 321456
    The nucleotide-binding modes of this and the next two folds/superfamilies are similar
  4. 2841005Superfamily c.2.1: NAD(P)-binding Rossmann-fold domains [51735] (13 families) (S)
  5. 2844998Family c.2.1.6: 6-phosphogluconate dehydrogenase-like, N-terminal domain [51868] (19 proteins)
    the beta-sheet is extended to 8 strands, order 32145678; strands 7 & 8 are antiparallel to the rest
    C-terminal domains also show some similarity
  6. 2844999Protein 5,10-methenyltetrahydromethanopterin hydrogenase, HMD [141932] (1 species)
  7. 2845000Species Methanocaldococcus jannaschii [TaxId:2190] [141933] (6 PDB entries)
    Uniprot Q58194 1-242
  8. 2845003Domain d2b0ja2: 2b0j A:1-242 [127640]
    Other proteins in same PDB: d2b0ja1

Details for d2b0ja2

PDB Entry: 2b0j (more details), 1.75 Å

PDB Description: The crystal structure of the apoenzyme of the iron-sulfur-cluster-free hydrogenase (Hmd)
PDB Compounds: (A:) 5,10-methenyltetrahydromethanopterin hydrogenase

SCOPe Domain Sequences for d2b0ja2:

Sequence; same for both SEQRES and ATOM records: (download)

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Methanocaldococcus jannaschii [TaxId: 2190]}

SCOPe Domain Coordinates for d2b0ja2:

Click to download the PDB-style file with coordinates for d2b0ja2.
(The format of our PDB-style files is described here.)

Timeline for d2b0ja2:

View in 3D
Domains from same chain:
(mouse over for more information)