SCOPe 2.07: Domain d2b0db_: 2b0d B:

Lineage for d2b0db_ (2b0d B:)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.52: Restriction endonuclease-like [52979] (4 superfamilies)
   core: 3 layers, a/b/a; mixed beta-sheet of 5 strands, order 12345; strands 2 &, in some families, 5 are antiparallel to the rest

4. Superfamily c.52.1: Restriction endonuclease-like [52980] (37 families)

5. Family c.52.1.2: Restriction endonuclease EcoRV [52984] (1 protein)
   automatically mapped to Pfam PF09233

6. Protein Restriction endonuclease EcoRV [52985] (1 species)

7. Species Escherichia coli [TaxId:562] [52986] (30 PDB entries)

8. Domain d2b0db_: 2b0d B: [127635]
   automated match to d1az0a_
   protein/DNA complex; complexed with ca

Details for d2b0db_

PDB Entry: 2b0d, 2 Å

PDB Description: ecorv restriction endonuclease/gaattc/ca2+

PDB Compounds: (B:) Type II restriction enzyme EcoRV

SCOPe Domain Sequences for d2b0db_:

Sequence, based on SEQRES records:

>d2b0db_ c.52.1.2 (B:) Restriction endonuclease EcoRV {Escherichia coli [TaxId: 562]}
slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgy
iveepkqqnhypdftlykpsepnkkiaidikttytnkenekikftlggytsfirnntkni
vypfdqyiahwiigyvytrvatrksslktyninelneipkpykgvkvflqdkwviagdla
gsgnttnigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiy
rgrk

Sequence, based on observed residues (ATOM records):

>d2b0db_ c.52.1.2 (B:) Restriction endonuclease EcoRV {Escherichia coli [TaxId: 562]}
slrsdlinalydenqkydvcgiisaegkiyplgsdtkvlstifelfsrpiinkiaekhgy
iveepkqqnhypdftlykpsepnkkiaidikttytnkekikftlggytsfirnntknivy
pfdqyiahwiigyvytrvatslktyninelneipkpykgvkvflqdkwviagdlagsgnt
tnigsihahykdfvegkgifdsedefldywrnyertsqlrndkynniseyrnwiyrgrk

Timeline for d2b0db_:

• d2b0db_ first appeared in SCOP 1.73, called d2b0db1
  
• d2b0db_ appears in SCOPe 2.06
  
• d2b0db_ appears in the current release, SCOPe 2.08