SCOPe 2.04: Domain d2apoa1: 2apo A:247-331

Lineage for d2apoa1 (2apo A:247-331)

1. Root: SCOPe 2.04

2. Class b: All beta proteins [48724] (176 folds)

3. Fold b.122: PUA domain-like [88696] (1 superfamily)
   pseudobarrel; mixed folded sheet of 5 strands; order 13452; strand 1 and 3 are parallel to each other

4. Superfamily b.122.1: PUA domain-like [88697] (14 families)

5. Family b.122.1.1: PUA domain [88698] (6 proteins)
   RNA-binding domain

6. Protein Pseudouridine synthase II TruB, C-terminal domain [88699] (5 species)

7. Species Methanococcus jannaschii [TaxId:2190] [141698] (1 PDB entry)
   Uniprot Q57612 247-331

8. Domain d2apoa1: 2apo A:247-331 [127133]
   Other proteins in same PDB: d2apoa2, d2apob_
   protein/RNA complex; complexed with k, zn

Details for d2apoa1

PDB Entry: 2apo, 1.95 Å

PDB Description: Crystal Structure of the Methanococcus jannaschii Cbf5 Nop10 Complex

PDB Compounds: (A:) Probable tRNA pseudouridine synthase B

SCOPe Domain Sequences for d2apoa1:

Sequence; same for both SEQRES and ATOM records:

>d2apoa1 b.122.1.1 (A:247-331) Pseudouridine synthase II TruB, C-terminal domain {Methanococcus jannaschii [TaxId: 2190]}
hlkkvvvkdsavdaichgadvyvrgiaklskgigkgetvlvetlkgeavavgkalmntke
ilnadkgvavdvervymdrgtyprm

Timeline for d2apoa1:

• d2apoa1 first appeared in SCOP 1.73
  
• d2apoa1 appears in SCOPe 2.03
  
• d2apoa1 appears in SCOPe 2.05
  
• d2apoa1 appears in the current release, SCOPe 2.08