SCOPe 2.07: Domain d2ajff_: 2ajf F:

Lineage for d2ajff_ (2ajf F:)

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.318: SARS receptor-binding domain-like [143586] (1 superfamily)
   core: 3 layers, a/b/a; antiparallel beta-sheet of 5 strands, order 13542

4. Superfamily d.318.1: SARS receptor-binding domain-like [143587] (1 family)
   automatically mapped to Pfam PF09408

5. Family d.318.1.1: SARS receptor-binding domain-like [143588] (1 protein)
   part of PfamB PB000266

6. Protein Spike protein S1 [143589] (4 species)

7. Species SARS coronavirus [TaxId:227859] [143590] (14 PDB entries)
   Uniprot P59594 320-502! Uniprot P59594 321-512! Uniprot P59594 323-502

8. Domain d2ajff_: 2ajf F: [126885]
   Other proteins in same PDB: d2ajfa_, d2ajfb_
   automated match to d2dd8s1
   complexed with cl, nag, zn

Details for d2ajff_

PDB Entry: 2ajf, 2.9 Å

PDB Description: structure of sars coronavirus spike receptor-binding domain complexed with its receptor

PDB Compounds: (F:) SARS-coronavirus spike protein

SCOPe Domain Sequences for d2ajff_:

Sequence, based on SEQRES records:

>d2ajff_ d.318.1.1 (F:) Spike protein S1 {SARS coronavirus [TaxId: 227859]}
cpfgevfnatkfpsvyawerkkisncvadysvlynstffstfkcygvsatklndlcfsnv
yadsfvvkgddvrqiapgqtgviadynyklpddfmgcvlawntrnidatstgnynykyry
lrhgklrpferdisnvpfspdgkpctppalncywplndygfytttgigyqpyrvvvlsfe

Sequence, based on observed residues (ATOM records):

>d2ajff_ d.318.1.1 (F:) Spike protein S1 {SARS coronavirus [TaxId: 227859]}
cpfgevfnatkfpsvyawerkkisncvadysvlynstffstfkcygvsatklnvyadsfv
vkgddvrqiapgqtgviadynyklpddfmgcvlawntrnidatstgnynykyrylrhgkl
rpferdisnvpfspdgkpctppalncywplndygfytttgigyqpyrvvvlsfe

Timeline for d2ajff_:

• d2ajff_ first appeared in SCOP 1.73, called d2ajff1
  
• d2ajff_ appears in SCOPe 2.06
  
• d2ajff_ appears in the current release, SCOPe 2.08