SCOPe 2.06: Domain d2afhd_: 2afh D:

Lineage for d2afhd_ (2afh D:)

1. Root: SCOPe 2.06

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.92: Chelatase-like [53799] (3 superfamilies)
   duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134

4. Superfamily c.92.2: "Helical backbone" metal receptor [53807] (5 families)
   contains a long alpha helical insertion in the interdomain linker

5. Family c.92.2.3: Nitrogenase iron-molybdenum protein [53816] (3 proteins)
   contains three domains of this fold; "Helical backbone" holds domains 2 and 3
   both chains are homologous; the inter-chain arrangement of domains 1 is similar to the intra-chain arrangement of domains 2 and 3
   automatically mapped to Pfam PF00148

6. Protein Nitrogenase iron-molybdenum protein, beta chain [81401] (3 species)
   both chains are homologous; the inter-chain arrangement of domains 1 is similar to the intra-chain arrangement of domains 2 and 3

7. Species Azotobacter vinelandii [TaxId:354] [81397] (23 PDB entries)

8. Domain d2afhd_: 2afh D: [126682]
   Other proteins in same PDB: d2afha_, d2afhc_, d2afhe_, d2afhf_
   automated match to d1fp4b_
   complexed with 1pe, ca, cfn, clf, hca, na, p6g, peg, pg4, pge, sf4, trs

Details for d2afhd_

PDB Entry: 2afh, 2.1 Å

PDB Description: crystal structure of nucleotide-free av2-av1 complex

PDB Compounds: (D:) Nitrogenase molybdenum-iron protein

SCOPe Domain Sequences for d2afhd_:

Sequence; same for both SEQRES and ATOM records:

>d2afhd_ c.92.2.3 (D:) Nitrogenase iron-molybdenum protein, beta chain {Azotobacter vinelandii [TaxId: 354]}
sqqvdkikasyplfldqdykdmlakkrdgfeekypqdkidevfqwtttkeyqelnfqrea
ltvnpakacqplgavlcalgfektmpyvhgsqgcvayfrsyfnrhfrepvscvsdsmted
aavfggqqnmkdglqnckatykpdmiavsttcmaevigddlnafinnskkegfipdefpv
pfahtpsfvgshvtgwdnmfegiaryftlksmddkvvgsnkkinivpgfetylgnfrvik
rmlsemgvgysllsdpeevldtpadgqfrmyaggttqeemkdapnalntvllqpwhlekt
kkfvegtwkhevpklnipmgldwtdeflmkvseisgqpipasltkergrlvdmmtdshtw
lhgkrfalwgdpdfvmglvkfllelgcepvhilchngnkrwkkavdailaaspygknatv
yigkdlwhlrslvftdkpdfmignsygkfiqrdtlhkgkefevplirigfpifdrhhlhr
sttlgyegamqilttlvnsilerldeetrgmqatdynhdlvr

Timeline for d2afhd_:

• d2afhd_ first appeared in SCOP 1.73, called d2afhd1
  
• d2afhd_ appears in SCOPe 2.05
  
• d2afhd_ appears in SCOPe 2.07
  
• d2afhd_ appears in the current release, SCOPe 2.08