SCOPe 2.07: Domain d2afbb2: 2afb B:1-331

Lineage for d2afbb2 (2afb B:1-331)

1. Root: SCOPe 2.07

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.72: Ribokinase-like [53612] (3 superfamilies)
   core: 3 layers: a/b/a; mixed beta-sheet of 8 strands, order 21345678, strand 7 is antiparallel to the rest
   potential superfamily: members of this fold have similar functions but different ATP-binding sites

4. Superfamily c.72.1: Ribokinase-like [53613] (6 families)
   has extra strand located between strands 2 and 3

5. Family c.72.1.1: Ribokinase-like [53614] (10 proteins)
   automatically mapped to Pfam PF00294

6. Protein 2-keto-3-deoxygluconate kinase [75295] (2 species)

7. Species Thermotoga maritima, TM0067 [TaxId:2336] [75296] (2 PDB entries)

8. Domain d2afbb2: 2afb B:1-331 [126675]
   Other proteins in same PDB: d2afba3, d2afbb3
   automated match to d1j5va_
   complexed with ca, ni

Details for d2afbb2

PDB Entry: 2afb, 2.05 Å

PDB Description: crystal structure of 2-dehydro-3- deoxygluconokinase (ec 2.7.1.45) (tm0067) from thermotoga maritima at 2.05 a resolution

PDB Compounds: (B:) 2-keto-3-deoxygluconate kinase

SCOPe Domain Sequences for d2afbb2:

Sequence, based on SEQRES records:

>d2afbb2 c.72.1.1 (B:1-331) 2-keto-3-deoxygluconate kinase {Thermotoga maritima, TM0067 [TaxId: 2336]}
mkvvtfgeimlrlsppdhkrifqtdsfdvtyggaeanvaaflaqmgldayfvtklpnnpl
gdaaaghlrkfgvktdyiarggnrigiyfleigasqrpskvvydrahsaiseakredfdw
ekildgarwfhfsgitpplgkelpliledalkvanekgvtvscdlnyrarlwtkeeaqkv
mipfmeyvdvlianeediekvlgisvegldlktgklnreayakiaeevtrkynfktvgit
lresisatvnywsvmvfengqphfsnryeihivdrvgagdsfagaliygslmgfdsqkka
efaaaasclkhtipgdfvvlsieeieklasg

Sequence, based on observed residues (ATOM records):

>d2afbb2 c.72.1.1 (B:1-331) 2-keto-3-deoxygluconate kinase {Thermotoga maritima, TM0067 [TaxId: 2336]}
mkvvtfgeimlrlsppdhkrifqtdsfdvtyggaeanvaaflaqmgldayfvtklpnnpl
gdaaaghlrkfgvktdyiarggnrigiyfleigasqrpskvvydrahsaiseakredfdw
ekildgarwfhfsgitpplgkelpliledalkvanekgvtvscdlnyrarlwtkeeaqkv
mipfmeyvdvlianeediekvlgisvegldnreayakiaeevtrkynfktvgitlresis
atvnywsvmvfengqphfsnryeihivdrvgagdsfagaliygslmgfdsqkkaefaaaa
sclkhtipgdfvvlsieeieklasg

Timeline for d2afbb2:

• d2afbb2 first appeared in SCOP 1.73, called d2afbb1
  
• d2afbb2 appears in SCOPe 2.06
  
• d2afbb2 appears in the current release, SCOPe 2.08