SCOPe 2.06: Domain d2abrd_: 2abr D:

Lineage for d2abrd_ (2abr D:)

1. Root: SCOPe 2.06

2. Class d: Alpha and beta proteins (a+b) [53931] (385 folds)

3. Fold d.126: Pentein, beta/alpha-propeller [55908] (1 superfamily)
   duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis

4. Superfamily d.126.1: Pentein [55909] (8 families)

5. Family d.126.1.4: Arginine deiminase [103232] (1 protein)
   functionally related to the amidinotransferase, similar active sites

6. Protein Arginine deiminase [103233] (2 species)

7. Species Pseudomonas aeruginosa [TaxId:287] [103234] (5 PDB entries)

8. Domain d2abrd_: 2abr D: [126533]
   automated match to d1rxxb_

Details for d2abrd_

PDB Entry: 2abr, 2.9 Å

PDB Description: structure of d280a arginine deiminase with l-arginine forming a s- alkylthiouronium reaction intermediate

PDB Compounds: (D:) Arginine deiminase

SCOPe Domain Sequences for d2abrd_:

Sequence, based on SEQRES records:

>d2abrd_ d.126.1.4 (D:) Arginine deiminase {Pseudomonas aeruginosa [TaxId: 287]}
tklgvhseagklrkvmvcspglahqrltpsncdellfddviwvnqakrdhfdfvtkmrer
gidvlemhnlltetiqnpealkwildrkitadsvglgltselrswlesleprklaeylig
gvaaddlpaseganilkmyreylghssfllpplpntqftrdttcwiyggvtlnpmywpar
rqetllttaiykfhpefanaefeiwygdpdkdhgsstleggdvmpigngvvligmgerss
rqaigqvaqslfakgaaervivaglpksraamhlatvfsfcdrdlvtvfpevvkeivpfs
lrpdpsspygmnirreektflevvaeslglkklrvvetggnsfaaereqwddgnnvvcle
pgvvvgydrntytntllrkagvevitisaselgrgrggghcmtcpivrdpi

Sequence, based on observed residues (ATOM records):

>d2abrd_ d.126.1.4 (D:) Arginine deiminase {Pseudomonas aeruginosa [TaxId: 287]}
tklgvhseagklrkvmvcspglahqrltpsncdellfddviwvnqakrdhfdfvtkmrer
gidvlemhnlltetiqnpealkwildrkitadsvglgltselrswlesleprklaeylig
gvaaddlpaseganilkmyreylghssfllpplpntqftrdttcwiyggvtlnpmywpar
rqetllttaiykfhpefanaefeiwygdpdkdhgsstleggdvmpigngvvligmgerss
rqaigqvaqslfakgaaervivaglpksrmhlatvfsfcdrdlvtvfpevvkeivpfslr
pdpsspygmnirreektflevvaeslglkklrvvetgreqwddgnnvvclepgvvvgydr
ntytntllrkagvevitisaselgrgrggghcmtcpivrdpi

Timeline for d2abrd_:

• d2abrd_ first appeared in SCOP 1.73, called d2abrd1
  
• d2abrd_ appears in SCOPe 2.05
  
• d2abrd_ appears in SCOPe 2.07
  
• d2abrd_ appears in the current release, SCOPe 2.08