SCOPe 2.08: Domain d2aafd_: 2aaf D:

Lineage for d2aafd_ (2aaf D:)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.126: Pentein, beta/alpha-propeller [55908] (1 superfamily)
   duplication: composed of 5 alpha-beta(2)-alpha-beta units arranged around pseudo fivefold axis

4. Superfamily d.126.1: Pentein [55909] (8 families)

5. Family d.126.1.4: Arginine deiminase [103232] (1 protein)
   functionally related to the amidinotransferase, similar active sites

6. Protein Arginine deiminase [103233] (2 species)

7. Species Pseudomonas aeruginosa [TaxId:287] [103234] (5 PDB entries)

8. Domain d2aafd_: 2aaf D: [126474]
   automated match to d1rxxb_

Details for d2aafd_

PDB Entry: 2aaf, 2.3 Å

PDB Description: structure of h278a arginine deiminase with l-arginine forming a s- alkylthiouronium reaction intermediate

PDB Compounds: (D:) Arginine deiminase

SCOPe Domain Sequences for d2aafd_:

Sequence, based on SEQRES records:

>d2aafd_ d.126.1.4 (D:) Arginine deiminase {Pseudomonas aeruginosa [TaxId: 287]}
tklgvhseagklrkvmvcspglahqrltpsncdellfddviwvnqakrdhfdfvtkmrer
gidvlemhnlltetiqnpealkwildrkitadsvglgltselrswlesleprklaeylig
gvaaddlpaseganilkmyreylghssfllpplpntqftrdttcwiyggvtlnpmywpar
rqetllttaiykfhpefanaefeiwygdpdkdhgsstleggdvmpigngvvligmgerss
rqaigqvaqslfakgaaervivaglpksraamaldtvfsfcdrdlvtvfpevvkeivpfs
lrpdpsspygmnirreektflevvaeslglkklrvvetggnsfaaereqwddgnnvvcle
pgvvvgydrntytntllrkagvevitisaselgrgrggghcmtcpivrdpidy

Sequence, based on observed residues (ATOM records):

>d2aafd_ d.126.1.4 (D:) Arginine deiminase {Pseudomonas aeruginosa [TaxId: 287]}
tklgvhseagklrkvmvcspglahqrltpsncdellfddviwvnqakrdhfdfvtkmrer
gidvlemhnlltetiqnpealkwildrkitadsvglgltselrswlesleprklaeylig
gvaaddlpaseganilkmyreylghssfllpplpntqftrdttcwiyggvtlnpmywpar
rqetllttaiykfhpefanaefeiwygdpdkdhgsstleggdvmpigngvvligmgerss
rqaigqvaqslfakgaaervivaglpksraamaldtvfsfcdrdlvtvfpevvkeivpfs
lrpdpsspygmnirreektflevvaeslglkklrvvetgreqwddgnnvvclepgvvvgy
drntytntllrkagvevitisaselgrgrggghcmtcpivrdpidy

Timeline for d2aafd_:

• d2aafd_ first appeared in SCOP 1.73, called d2aafd1
  
• d2aafd_ appears in SCOPe 2.07