SCOPe 2.01: Domain d2a5ta_: 2a5t A:

Lineage for d2a5ta_ (2a5t A:)

1. Root: SCOPe 2.01

2. Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.1: Phosphate binding protein-like [53851] (41 proteins)

6. Protein N-methyl-D-aspartate receptor subunit 1 [89787] (2 species)

7. Species Norway rat (Rattus norvegicus) [TaxId:10116] [89788] (8 PDB entries)

8. Domain d2a5ta_: 2a5t A: [126179]
   Other proteins in same PDB: d2a5tb_
   automated match to d1pb7a_
   complexed with glu, gly

Details for d2a5ta_

PDB Entry: 2a5t, 2 Å

PDB Description: crystal structure of the nr1/nr2a ligand-binding cores complex

PDB Compounds: (A:) N-methyl-D-aspartate receptor NMDAR1-4a subunit

SCOPe Domain Sequences for d2a5ta_:

Sequence, based on SEQRES records:

>d2a5ta_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}
trlkivtihqepfvyvkptmsdgtckeeftvngdpvkkvictgpndtspgsprhtvpqcc
ygfcidlliklartmnftyevhlvadgkfgtqervnnsnkkewngmmgellsgqadmiva
pltinneraqyiefskpfkyqgltilvkkgtritgindprlrnpsdkfiyatvkqssvdi
yfrrqvelstmyrhmekhnyesaaeaiqavrdnklhafiwdsavlefeasqkcdlvttge
lffrsgfgigmrkdspwkqnvslsilkshengfmedldktwvry

Sequence, based on observed residues (ATOM records):

>d2a5ta_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Norway rat (Rattus norvegicus) [TaxId: 10116]}
trlkivtihqepfvyvkptmsdgtckeeftvngdpvkkvictgpntvpqccygfcidlli
klartmnftyevhlvadgkfgtqervkkewngmmgellsgqadmivapltinneraqyie
fskpfkyqgltilvkkgtritgindprlrnpsdkfiyatvkqssvdiyfrrqvelstmyr
hmekhnyesaaeaiqavrdnklhafiwdsavlefeasqkcdlvttgelffrsgfgigmrk
dspwkqnvslsilkshengfmedldktwvry

Timeline for d2a5ta_:

• d2a5ta_ first appeared in SCOP 1.73, called d2a5ta1
  
• d2a5ta_ was called d2a5ta1 in SCOP 1.75
  
• d2a5ta_ appears in SCOPe 2.02
  
• d2a5ta_ appears in the current release, SCOPe 2.08